Cpin022417.1
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- -
- Assembly
- GCA_963556745.1
- Location
- OY750787.1:6324540-6328481[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00033 8.4 7.1 0.1 17 43 133 159 130 170 0.92 2 6 0.17 4.4e+03 -1.6 0.1 26 44 171 189 160 192 0.79 3 6 0.00083 21 5.8 0.1 20 46 193 219 184 225 0.84 4 6 1.7e-07 0.0044 17.6 0.1 20 46 249 275 241 281 0.88 5 6 0.04 1e+03 0.4 0.0 22 46 279 303 275 311 0.81 6 6 0.29 7.3e+03 -2.3 0.0 4 12 329 337 326 342 0.77
Sequence Information
- Coding Sequence
- ATGAGTAGCAATTTTATCGAAAATACTCCAGAATTTGTACATGTGAAACAAGAAATCATCGAACACGATATTACTAGAGTCaaacatgaaataaaaacagaagtAGAGGCTGAACATAGCAAAGAAGTTGCTGAAAATGAATGTCTCAGTGTTGTTACTGAACAAGCGGCAACTGAGAGCGCTGCATACTTTGCAGAATGTGTGATAAAAGATGAACCAATTGATTATTGCGACCACAATGTAACTGACTCGCATTATGATGGAATTATTGAAGAGACTGAAGAGTGGATAGACCAAtcagactCAAAGAGAGCGCACACAAACAAACAGCAAAAAGAATACAAATGCGACCATTGTGATAAGATCTGCAAGACGTCATCTCTACTCGGACAACATAAACGGTCACACATGACCAATCCGTACACTTGTGACCTCTGCGGCAAACAATTTTCTTTAATAGCCAACCTCCGCCGACACAAAGGCAGTAGTCGTTGCAAAATCCCCATACTGAACTGTTCCATTTGCCACAAGTCGTTCAAAACAGAATACTTACTAAAAAGTCATCTACGCAGTCACACAACTGAGATACCGTATACATGTGACTTGTGCCAAAAGAAGTTTAAACATAAAACTACATTGGCTCGCCATATACAAGTTCATAGTGGAATAACACCGTATAAGTGCAAATTCTGTGACAAACGCTTTACTCATATAACATTGTTGAAACCGCACATGATAAAGCATACCGGTGAAAAACCACACCAATGTCCAAAGTGTTATAAAGCTTTTGGGCAAAAACACAACATGCTCAGACATTTGGAGAACCATAAAAGAGAAAAGAAATTAACTTGTGATGTGTGCAACAAACTGTTCCCTAAAGAAAGCCGGTTGAAATATCACATGAAAATCCATgtgaatgaaaaatatttctccTGTTTTATTTGTCCTAAGAAATTTTCGCATAGAGGGAATATAATTAAGCATTACCATGCAAAACATCCTAATGATACTTACGATTGTAAAGATACTGACGCTAGCGTAGCTTTGAAAATATGGAAAGAGGTGGTTGTCGATAAAAGTAGAAAACTAGATAAACTACCGGAAGATAATATTTGTATTCCTGTTGGAAATACAGAAATTCTTAAAACGATGCCCAGTAAATCCAAAAAAGTTACAGAAAAAACTGTTGAGAGAATTGAAGAGGAGACTCAGTATATATTACCAGATTTTATACCAGATTCGACTAAAAATTTTGTAGTTAAGGAAGAAAAGGCAACGTCAGATGTGGAATTATAA
- Protein Sequence
- MSSNFIENTPEFVHVKQEIIEHDITRVKHEIKTEVEAEHSKEVAENECLSVVTEQAATESAAYFAECVIKDEPIDYCDHNVTDSHYDGIIEETEEWIDQSDSKRAHTNKQQKEYKCDHCDKICKTSSLLGQHKRSHMTNPYTCDLCGKQFSLIANLRRHKGSSRCKIPILNCSICHKSFKTEYLLKSHLRSHTTEIPYTCDLCQKKFKHKTTLARHIQVHSGITPYKCKFCDKRFTHITLLKPHMIKHTGEKPHQCPKCYKAFGQKHNMLRHLENHKREKKLTCDVCNKLFPKESRLKYHMKIHVNEKYFSCFICPKKFSHRGNIIKHYHAKHPNDTYDCKDTDASVALKIWKEVVVDKSRKLDKLPEDNICIPVGNTEILKTMPSKSKKVTEKTVERIEEETQYILPDFIPDSTKNFVVKEEKATSDVEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00036284;
- 90% Identity
- iTF_00284814;
- 80% Identity
- iTF_00284814;