Basic Information

Insect: Agriphila geniculea
Gene Symbol: -
Assembly: GCA_943789515.1
Location: CALSUL010000597.1:380796-386360[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0052 1.7e+02 4.2 0.0 23 43 143 163 135 172 0.87

2 5 0.00025 8.1 8.4 0.2 18 46 194 223 176 229 0.89

3 5 1.2e-05 0.37 12.7 0.0 20 46 253 279 243 285 0.87

4 5 0.025 8.2e+02 2.0 0.0 21 46 282 307 279 312 0.83

5 5 0.08 2.6e+03 0.4 0.0 2 12 331 341 330 350 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0052	1.7e+02	4.2	0.0	23	43	143	163	135	172	0.87
2	5	0.00025	8.1	8.4	0.2	18	46	194	223	176	229	0.89
3	5	1.2e-05	0.37	12.7	0.0	20	46	253	279	243	285	0.87
4	5	0.025	8.2e+02	2.0	0.0	21	46	282	307	279	312	0.83
5	5	0.08	2.6e+03	0.4	0.0	2	12	331	341	330	350	0.82

Sequence Information

Coding Sequence: ATGAGTGGTAGCAATTTTATCGGAGATATCCCAGAATTTGTACATGTGAAACCAGAGATCCTCAATTACGATATTACTAGTGTCAAAcaggaaataaaaattaaaaaagaggaTGAAGACGATAATGAAGATAATAAAGTTACTGAAAATGGATGCCCCAATATTGTTACTGAACAAATGCCAGATTCCAGCGCTGCATTCTTTGAAGAATGTGTGATAAAAGAAGAACCACTTGATTATTGCAATGGCAATGTAACTgaTCCACATTGTGATGAAATTGTTGAAGAGACTGAAGAGTGGATAAACCAATcagactcaAATCAAGCGacgcacacaaacaaacaaacaaaagaataCAAATGCAACCTTTGTAGTAAGATCTGCAAAACCTCATCACTACTCGGTAAACATAAACAATCACACATAAATCCGTACACTTGTGACCTCTGCGGCAAACTATTTTCGTTAAAACAAAACCTTCACCGACACAAAGGCAGTAGTCGCTGCAAGATTCCCAAAGTAAATTGTTTTATATGCCAAAAGTCGTTCAAAACCGAATACTTACTAAAAAGCCACCTCCGTAGTCACCAAACTGAAATACCTTATACATGTGACTTGTGTCAAAAGAAGTTTAAACATAAAACCACTTTGGCTCGCCATATGCAAATCCATAGTGGGATAACACCGTTCAAGTGCAAATTCTGCGGTAAAGGTTTCACGCACAGAACTTCGTTAAAACCCCACATGATAAAACATACTGGTGAAAAACCACACCAGTGTCCAAAGTGTTATAAAAGATTTGGACATAAACATGACATGAAGAGACAtttagaaaaacataaaaaagaaaagaaattaacTTGTGATATTTGCAATAAACTGTTTCCTAAAGAAAGCCACTTGAAATATCACATGAAAATTCAtgttaaagaaaaatatttctcATGTTTAATTTGTCCTAAGAAATTTTCTCATAGATGTAATGTAATAAAGCATTACCGAGCAAAACATCCTAATGATACATATGTTTGTAAAGACACTGACGCTAGCGTAGCATTGAAAATATGGCAAGAAGTGGTCGTTGATAAAAGTCGAAAACTAGACAAAATACAGgaagaaaatatttgtatacCTGTTGGAAAAACGGAAATTCTTGAAACAATGCCttgtaaatatataaaagtTATAGAAAAAGCAGTCGAGAGAATTGAAGAGGAATCCCAGTATATATTACCAGATTTTATACCGGATTCAACTAAATATGAAATAGTTAAAGAAGAAAAGGTAACATCTGATGTAGAATTATTAAATGTGTGTGTGAGTGAAgttaattaa
Protein Sequence: MSGSNFIGDIPEFVHVKPEILNYDITSVKQEIKIKKEDEDDNEDNKVTENGCPNIVTEQMPDSSAAFFEECVIKEEPLDYCNGNVTDPHCDEIVEETEEWINQSDSNQATHTNKQTKEYKCNLCSKICKTSSLLGKHKQSHINPYTCDLCGKLFSLKQNLHRHKGSSRCKIPKVNCFICQKSFKTEYLLKSHLRSHQTEIPYTCDLCQKKFKHKTTLARHMQIHSGITPFKCKFCGKGFTHRTSLKPHMIKHTGEKPHQCPKCYKRFGHKHDMKRHLEKHKKEKKLTCDICNKLFPKESHLKYHMKIHVKEKYFSCLICPKKFSHRCNVIKHYRAKHPNDTYVCKDTDASVALKIWQEVVVDKSRKLDKIQEENICIPVGKTEILETMPCKYIKVIEKAVERIEEESQYILPDFIPDSTKYEIVKEEKVTSDVELLNVCVSEVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00036284;
90% Identity: iTF_00035068;
80% Identity: iTF_00035068;