Agen029914.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- -
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000373.1:742626-752505[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0053 1.1 11.6 1.5 3 23 209 230 208 230 0.96 2 23 0.26 52 6.3 0.3 1 22 638 659 638 659 0.95 3 23 0.44 89 5.6 0.2 1 23 700 723 700 723 0.91 4 23 0.001 0.21 13.9 0.3 2 21 733 752 732 753 0.94 5 23 0.54 1.1e+02 5.3 0.1 3 23 762 783 760 783 0.89 6 23 0.0031 0.62 12.4 0.4 3 23 804 825 802 825 0.94 7 23 0.0033 0.67 12.3 2.2 1 23 831 854 831 854 0.95 8 23 0.095 19 7.7 0.0 1 23 879 902 879 902 0.90 9 23 0.014 2.9 10.3 3.4 1 23 907 929 907 929 0.97 10 23 0.012 2.4 10.6 0.2 1 23 935 958 935 958 0.95 11 23 0.0015 0.31 13.3 3.5 1 23 971 993 971 993 0.98 12 23 0.00014 0.027 16.7 1.8 1 23 1047 1070 1047 1070 0.97 13 23 0.0012 0.25 13.6 1.7 1 23 1131 1154 1131 1154 0.96 14 23 0.0018 0.36 13.1 2.1 2 23 1180 1202 1179 1202 0.95 15 23 0.066 13 8.2 0.1 2 23 1208 1230 1207 1230 0.93 16 23 0.0075 1.5 11.2 0.2 1 21 1274 1294 1274 1295 0.95 17 23 0.00094 0.19 14.0 0.6 1 23 1305 1327 1305 1327 0.93 18 23 8.2e-05 0.017 17.3 0.4 2 23 1415 1437 1414 1437 0.93 19 23 2.5e-07 5.1e-05 25.2 1.4 3 23 1444 1464 1443 1464 0.98 20 23 0.019 3.9 9.9 0.1 1 23 1483 1506 1483 1506 0.95 21 23 0.11 22 7.5 0.0 1 23 1530 1552 1530 1552 0.98 22 23 0.021 4.2 9.8 0.6 1 23 1558 1581 1558 1581 0.95 23 23 0.00019 0.039 16.2 0.4 1 23 1589 1612 1589 1612 0.96
Sequence Information
- Coding Sequence
- atgaGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGTGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGATTCGGAACCTCCCGTTCTTGCATCGAAAATAAAGGATTGTGTCTCTGTTCAGATAAGCGAGAATGACGACCTGCCAACGAATGTCTGCAGGAAATGTGTGGATAACGTCAATAACTGGCATATATTCAAGGCAGTATGTGAAAGGACACAAAACAAACTTGAGTTACTGATAAAAAAGGATGGAAGCCAACTAGAAGAGATAAAAATAAAGCTTGAACCTCTGTCAGATGGTGCATATGATGATGGTGTGGTCATTGATGGCTCATACCCTGATAATGATGGAGCGGCAGTGTCAGCCAAAGTGCAGCCAGAAGGCCCTCCAATCTTGGCATCGTTGGGACTCACTCCGAGGAGTGATAAGGGGATCGAAAGTGAGAAAGAGGAAGATGAAGAAGAAGACGAGGAAGGAGCACCCGACCCAGTTCCGAAATATGCAAAAGTGCCGCGGATGCCCGAAGTTTCCATCACGGTAATGAGGCCCTCGGGCGAAACACTGCACTCTCGACAGGGCATCCAACAACTCGCCTCTAAAGACTGTCTCGTCTGTGGACGCTCCTACAGGTATTCCCACAACGCAAGACGTCACGAACTCACTTCACATAGTTTCGATAGGTACACTAACAAAATTACCCACAAAAAGCAACCGTCATATATGCAACCGAAACTAAGGCCGAACCCTTTCAATCCCAAAGCGCGGTTAATGCCAAATCCGATTAGCCATAAAATTAAACTCATGTCCAAACCGATGCCAAATAAAATGGTTCCACATAAAGTTCTGACACAAACACCACCGAAACCTGCTTTAATTAAGAGTAAGAAGGGGGCGCATAATAATTTGCCTTATCCTTTGCGTATTAAAGCTCTGAAAGATttacaaataaagaaaaaggaaCCACAAATTTTGAAAACACTTTTGACAGCTAAACCAGAACTTTTAGTAGCGGAACCCGAAATTACTCATTCGGGTCCGGAAAGTCCAGAAACATTGATTTCTGAGCCAGAAATCGCATCATTCCAAGTAGAAGCTGTATTGTCTGAACCAGATGCATATGATAAACAGCCAGATGATTCTTACGACCAGCAACAAGATGGATATGATCAACAAGCAGATGGTTACGATCAACAGGGTGGTGATGAAGAGGGTGAAGAAGATGAGACAAATAATCAAAATCAGCACTATGATACTGTTGACATGGAATCTGataatgaaattgaaatagCTCGAGAAAAAGATAATGAAATTGATGAAGAAGATCAAAATATGGAAGTAGATAATAACCAAAACGACGAGGAACATAATGAAGATGGTGCACAAAGTGACACTGAAAGAAATAACGCGGAAGATAATGACgaaaatgaagaaaataatgGAGCCGATGATATTGCGGAAGCTGTTGAAAATGACGCCGAGGGCGAAGATGTCAATGAAAATGAAGACGGAGAAAATGAAGAGCATAACGATAATCATGACGAGAACGCGGACGAAGACGACGAGGAACTTCCTCCAATGGAAATAGCTCCTGTCGTCGAGATCAACGAGGATATGCAGGCTAACTCCTGCAACAGTGAGCAGAACGAAGAAGAAGAGGAAGAGCTTgaagaaacagctgatttaaaTGTCACCGCTGATGGCGTAGAGGGAATCAAAGAAATCGACCCGGATAAACTGTATGTGACAAAAACACAGCGCGATTTCATTCAAAAATATCGCAATATTATTGAACAGATCAATACGAAACGGTGCCTTTGTTGTGACCGAGAACACCCTCGCAGGAAATCAGTCATACAACACTTACAGAAAAATGGCCATAAAGTACCAAAACACACATGTTATAATTGTGTTGTTACTTTTGGCCATATTGGAGCCCTTTTGAGCCATATGCGTTCTAATTCATGCACTAATTTATGGAAAATTATCTATAATGAAAATGGAATTACTGATGATATGGTTTTAGAGGATCCTAAAGACATTAAAGTTCAGTATAAAGATATTTTCAACGCTAGATCGTATGCTTGTAAACTGTGCCCAGCGAAATTCCAATTGAAGCAAAATATTATGAAGCATGTACTAGATGTTCATGAAGATGGTCAATCCCGCGTTGCACTCCGCTGCGTTCACTGTGGAGTTCGGTTCAAAGACAGAGGTTTGATTAAGAGGCATATTCGCATTGGTGGATGCACTGTTTATATAGCTTGTGATTTATGTTCAGAAAAATTTGTAAACATGCAAGATTTTAACGACCACGCTTTAGGCGTGCATGCCGGAAGTTTTGATCAATCTGACAGTCAAAGTAAATGCGTCGACGGGCGACCTACAGATTGCCCAATATGTGGCAAGAAGAACAGTAACTATCCGAATTTGACCAAACATTTGAAGGCTTTCCATAACGAAGAAAAACCACATTACTGTCAACATTGCGACGTCAAATATGAGCAACTGGCTGATCTTAACAAACACATTTACATGGAACATTCTGATTTCAGTTTTGCGCAAAGTAGTGAACCAGACATGTCTCTTGTGAAAGAAGAGGCTGAAGAGTATCATTATTCGTGTACGGAATGTAACgctatttttgaaactgttGACGCATGGACTGATCACCAAGTTGCAGAACATAACCAAACCGCTCATCACTGCGACCAATGTGAGAAGAAATTCTTACGACCGTCTGAGCTCGCTGAGCATAAGAACACCCATCTGCGTGTTAAATTTTATCCTTGCAGTGTTTGTTCAAACTCATACAGCACGCCGCAAAAGTTGTCCGAACACGTTCAAAATGCCCATCCCGGTGTGGGACAATTCACATCTATGGAGTCTGAATTTTACTGCCACATTTGCATAAGATCGTTCAAAAGCCGTCAAGCTTACTCTAATCACATGCGTATTCATGCTAAAGTACCAACTACTAACCGAAAGCCTGGAGAGCCGAAAGGAGGTTTTGCGCCACAAATAATCGGCAAACCTATCAAACAATTTACACCGGCGCCGGTTCAACAAGCGGCATCCAACATAGTCTTTAAACAAAACAGCAATGTTCCTAATGCTCCATATTCGTGTGATATTTGCGGTAAAGGTTTTATGCATAAGAAAAATATTTGGAAGCATAAAAAAGTACTTCACGCTGACCTCGTCAATGATAGGAACGATAGTGAAGAAAATACTATGCATGCTTCTACCGAAGAAGACGAGTATAATAATTTTGACGAAAATGGAGCTTTATTATCTACACCGCAATTCAACAGTTTCAACTTTGCTAACTTTAATAATGCACAGCAGCAACCATCCCAAGACCCGATGCCTTTCTCGTGCGAACTATGTTTCAAACGATTTCCACTTAGAAGTAGTTTGTGGAAACATAAACGAGCAAAACACGGCATCATTAATGTTAATGCGAGTGGTACCGACACTCAAGTTCAAGTGACTCCCAATGAAGCCGGTAATAGGTCCAGTTGTACGATATGTAGGATTACCTTTTCTGACAAGAAGTCTTACTATCGCCATAGAAAGAACGTTCATAAATCGACTACACAAATGTGCAAAATATGCGGTAAGCCACTTAACTCGACTTTGGAGTTGTACGAACATCTGAAAGCTGCACACGCAAGAGAATTACTAGGGTATGATGCCAGTCAAGGTTCCAGCAAAATGACAGATATGAAAGAAGAATTGGCCGAGGATTACGAGAACGATCAGGATTCAGTAGATCCTGGCGTCGAGTATCAAGCGAAGTACCCGTGCGATACGTGCGGCAAACAGTTTGTTGGATTACTAGCACTACAGAATCATCAATGTATTAATCAAATACCATCGCAACCTCAGACGTTCGACTGTGAAATATGTCACAAGAGTTACACGTCTATAGCGGCACTTAAAAGCCACCGCGGCTGGCATCTACGATCGCCGGACGGCAAAGCGGCTGCGAATAATACCGGGCTCTGGATGCCTCAACATAAAGTGACTAGTAAAGTGAGTAAATACGAAGTAGTGGACCCCGTACAGTTGGCGCGTCCCGTACACCAGCCGCCCGCCGCCACCGTGACCGCCAAAAGGAGACTCCCGCCAGAAGTGGAAGTCACCGTCGTGAAtccaaataaaaagttacgatcgGACGATTCCGTCGAATTGGAACAGGGCGGTTCCGTCGAGGATAAATACTGCACAATTTGCGATAAAGAGTTTACGAAACGCGCCGCCTACCAGCGCCACATGGACGAAGTGCATCAGCCGAATTCCGTGTTCTGTCCCGTCTGCGACAAGAGCTTCACTCGAAAGTCGACTCTGCTCGTCCACATGAAGAAGCATTACGAAGGCGGCGAGGGCAGCTCGACCGGGGCGGGCCAAGCGGAGGACGAGGGGTACGCGTGTGACGTGTGCGGCGCGCAGTACGATAGCGAGAAGGCGTTGATGAACCACCGAGCTCGGCAGCACGCGGAGGACGAGGGCGAGTCGGAGGAGGACGAGGGCGGCGAGGCGCCGGCGCCGCTGCAGCCGGGCGAGTTCACGTGCGCGCAGTGCGGCGACGGCGTGGCCACGCCGCGCGACCTCATCGCGCACCGCTCCATGCACGCGACCCCCACCAAATTCTTCTGCAACATCTGCAAAGTTTACTTTGCGAGAGCTCTCGACCTGTCCTCGCACACGCGGGCGAGGCACTCCGACAACGAAAAGGTTTTCTTTCCATGTGCCATGTGTGACCGTTTTTACATGAACAAGAAAAGTTTGCAGCGACATATCGAAATGGCGCATTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLASKIKDCVSVQISENDDLPTNVCRKCVDNVNNWHIFKAVCERTQNKLELLIKKDGSQLEEIKIKLEPLSDGAYDDGVVIDGSYPDNDGAAVSAKVQPEGPPILASLGLTPRSDKGIESEKEEDEEEDEEGAPDPVPKYAKVPRMPEVSITVMRPSGETLHSRQGIQQLASKDCLVCGRSYRYSHNARRHELTSHSFDRYTNKITHKKQPSYMQPKLRPNPFNPKARLMPNPISHKIKLMSKPMPNKMVPHKVLTQTPPKPALIKSKKGAHNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPELLVAEPEITHSGPESPETLISEPEIASFQVEAVLSEPDAYDKQPDDSYDQQQDGYDQQADGYDQQGGDEEGEEDETNNQNQHYDTVDMESDNEIEIAREKDNEIDEEDQNMEVDNNQNDEEHNEDGAQSDTERNNAEDNDENEENNGADDIAEAVENDAEGEDVNENEDGENEEHNDNHDENADEDDEELPPMEIAPVVEINEDMQANSCNSEQNEEEEEELEETADLNVTADGVEGIKEIDPDKLYVTKTQRDFIQKYRNIIEQINTKRCLCCDREHPRRKSVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNSCTNLWKIIYNENGITDDMVLEDPKDIKVQYKDIFNARSYACKLCPAKFQLKQNIMKHVLDVHEDGQSRVALRCVHCGVRFKDRGLIKRHIRIGGCTVYIACDLCSEKFVNMQDFNDHALGVHAGSFDQSDSQSKCVDGRPTDCPICGKKNSNYPNLTKHLKAFHNEEKPHYCQHCDVKYEQLADLNKHIYMEHSDFSFAQSSEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQTAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQNAHPGVGQFTSMESEFYCHICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGGFAPQIIGKPIKQFTPAPVQQAASNIVFKQNSNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVNDRNDSEENTMHASTEEDEYNNFDENGALLSTPQFNSFNFANFNNAQQQPSQDPMPFSCELCFKRFPLRSSLWKHKRAKHGIINVNASGTDTQVQVTPNEAGNRSSCTICRITFSDKKSYYRHRKNVHKSTTQMCKICGKPLNSTLELYEHLKAAHARELLGYDASQGSSKMTDMKEELAEDYENDQDSVDPGVEYQAKYPCDTCGKQFVGLLALQNHQCINQIPSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQHKVTSKVSKYEVVDPVQLARPVHQPPAATVTAKRRLPPEVEVTVVNPNKKLRSDDSVELEQGGSVEDKYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSTGAGQAEDEGYACDVCGAQYDSEKALMNHRARQHAEDEGESEEDEGGEAPAPLQPGEFTCAQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319120; iTF_00448341; iTF_01279512; iTF_01124794; iTF_00075774;
- 90% Identity
- -
- 80% Identity
- -