Csup003328.1
Basic Information
- Insect
- Chilo suppressalis
- Gene Symbol
- -
- Assembly
- None
- Location
- chr6:7839542-7850697[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0074 0.43 10.9 1.0 3 23 209 230 208 230 0.96 2 23 0.21 12 6.3 0.3 1 22 639 660 639 660 0.95 3 23 4.1 2.4e+02 2.3 0.3 1 22 701 722 701 724 0.82 4 23 0.00035 0.02 15.1 0.4 2 21 734 753 733 754 0.94 5 23 0.12 6.7 7.1 0.1 3 23 763 784 761 784 0.93 6 23 0.0087 0.5 10.7 0.1 3 23 805 826 803 826 0.94 7 23 0.00027 0.016 15.4 2.0 1 23 832 855 832 855 0.95 8 23 0.076 4.4 7.7 0.0 1 23 881 904 881 904 0.90 9 23 0.0033 0.19 12.0 3.5 1 23 909 931 909 931 0.97 10 23 0.0094 0.54 10.6 0.2 1 23 937 960 937 960 0.95 11 23 0.00063 0.036 14.3 1.3 1 23 973 995 973 995 0.98 12 23 0.00011 0.0062 16.7 1.8 1 23 1044 1067 1044 1067 0.97 13 23 0.0041 0.24 11.7 1.8 1 23 1128 1151 1128 1151 0.96 14 23 0.0014 0.083 13.1 2.1 2 23 1177 1199 1176 1199 0.95 15 23 0.053 3 8.2 0.1 2 23 1205 1227 1204 1227 0.93 16 23 0.0045 0.26 11.6 0.5 1 21 1271 1291 1271 1292 0.95 17 23 0.00025 0.015 15.5 1.0 1 23 1302 1324 1302 1324 0.93 18 23 6.6e-05 0.0038 17.3 0.4 2 23 1411 1433 1410 1433 0.93 19 23 2e-07 1.2e-05 25.3 1.4 3 23 1440 1460 1439 1460 0.98 20 23 0.0031 0.18 12.1 0.1 1 23 1479 1502 1479 1502 0.96 21 23 0.057 3.3 8.1 0.0 1 23 1523 1545 1523 1545 0.98 22 23 0.017 0.96 9.8 0.6 1 23 1551 1574 1551 1574 0.95 23 23 0.00015 0.0089 16.2 0.4 1 23 1582 1605 1582 1605 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTGTGATCGTGTTTGTAGACTGTGCTTGTCATTTCGAGGCGAATTAGTGCCTATTTTTCCTACCACCAGTTCGGATGAATCGGAACCTCCCGTTCTTGCATCAAAAATAAAGGATTGCGTCTCAATTCAGATAAGCGAGAATGACGACCTGCCTACGAATGTCTGCAGGAAATGTGTGGATAATGTCAATAACTGGCACATATTCAAGACAGTATGTGAAAGGACACAAAACAAACTTGAGCTACTGATAAAAAAAGATGGAAGCCAACTAGAAGAGATAAAAATAAAGAGTGAACCACTATCTGATGGAGCATATGATGATGGTGTGGTCATTGATGGCTCATATCCTGATAATGAAAATGCTACAGCGTCAGCCAAGGTGCAGCCTGAAGGCCCTCCAATTCTGGCCTCACTAGGCCTAACACCAAGGAGTGATAAGGGCGTCGAGAGTGAGAAAGATGATGAAGAAGAAGAAGAAGATGAAGAAGCGCCCGAGGCTGTTCAAAAATATCCAAAAGTTCAGCGAATGCCTGAAGTGTCCATCACAGTTATGCGATCCTCCGGCGAAACCCTGCATGCTCGTCAAGGTATCCAACAACTCGCTTCTAAAGACTGTCTCGTCTGCGGCCGCGCTTACAGATATTCTCACAATGCTAGACGACACGAGCTAACTTCCCATAGTTTCGATAGGTACACTAATAAAATTACAAACAAAAAGCAACCATCACATATGCAACCTAAACTTAGGCCGAACCCTTTCAATCCGAAAGCGCGGTTAATGCCAAATCCAATAAGCCATAAAATGCAACTGATCAGTAAACCGATTCCTATGCCGACTAAAATGGTCCCACATAAGATGGCACCGTCTCCGAAACCTGTTCTAGTTAAAACTAATAAAGGGTCACAGAATAATCTGCCTTATCCACTGCGCATAAAGGCTTTGAAAGATTTGCAAATTAAGAAGAAAGAACCACAAATTTTGAAAACTCTTTTGACTTCTAAACCGGAGGTTGTGGTGACCGAGCCTGAGATCATACACTCTGGACCCGAAAGTCCCGAAACGTTGATATCGGAACCGGAAATTGCTTCGTTCCAAGTTGAGGCAATATTGTCGGAGCCAGATGGATATGACAAACAACCAGATGGTTATGATCACCAACAAGATGGATTTGACCAACAAGCCGATGGTTATGATCAACAGGGTGGGGATGAAGAGGGAGAAGACGGTGATGCTAATAACCAAACTCAAAACTATGACACTGTTGATATGGAATCCGACAATGAAATCGAAATAGCCCGGGAACAAGGAAATGAACTTGAAGAGGAAGATCAAAATATGGAAACAGAAAATAACCAAAATGACGAGGAAAACAATGCAGACGTTCAAAGTGACACTGAGAGACATAATACTGAAGAAAATGGCGAAAACGAAGAGAATTTGGCTTCTGGTGATAACGGTGAATATAAAACTACAGAAAATTATGCTGAAGGTGATGAAGGTAATGAAAATGAAGAAAGAGAAATTAACGAACACAATGATAATCACCACGAGAATCTAGATGAAGACGATGAGGAGCTTCCTCCAATGGAATTAGCACCAGTTGTAGAAATCAACGAGGACATGCAAACCAATTCGTACAACAGTGAGCATAACGAAGAAGAAGAGGAAGAAGATGCTGAAGAAACCACTGAATTGAATGATACCACTGATGGAGTCGAAGGAATCAAAGAGATCGACCCCGATAAACTGTATGTGACAAAAACACAGCGCGATTTCATTGCTAAATACCGAGATGTCATTCAACAAATTAACACAAAACGGTGTCTTTGCTGCGACAGAGAACATCCTCGCAGAAAAGCCGTTATACAACACTTACAGAAAAATGGCCAGAAAGTACCAAAACATACATGCTACAATTGTGTTGTTACTTTTGGCCATATCGGTGCACTTTTGAGCCATATGCGATCTAATTCATGCACAAATCTGTGGAAAATCATCTACAATGAAAATGGAATCACCGATGACTTAGTGCTGGAAGATCCTAAAGATAATAAAGTTCAGTACAAAGATATTTTCAATGCAAGGTCGTATGCTTGTAAATTGTGCCCAGCGAAATTCCAATTGAAACAGTTCATAATGAAACACGTGTTGGACGTTCATGAAGATGGCCAATCACGAGTGCCCCTCGTGTGTGTTCACTGTGGTGTTCGGTTTAAAGATAAGAGTTTGATTAAGAAACATATTCGCAACGGCGAATGCACCGTGTATATCGCTTGTGATTTATGTTCAGAGACGTTTATAAACATGCAAGACTTTAACGACCATGCTTTAAGCGCTCACGCCGGAAGCTTTGATCAATCTGACAATCAAAACAAATGCGTCGACGGACGGCCAACAGATTGTCCAATATGTGGCAAGAAGAACAGTAGCTATCCGAATTTGGTCAAACATTTGAAAGCTATACACAACGAAGAGAAACCACATTATTGCCAGCATTGCGACGTCAAATTCGAGCAAGCTGCTGATCTTAACAAACACATTTATATGGAGCACTCTGACAGAAGTTTAGGCATGCAAAGTCATGAACCGGACATGTCTCTCGTGAAAGAAGAAGCGGAAGAATACCATTACTCTTGTACGGAATGTAACGCTATATTTGAAACTGTCGACGCATGGACAGATCACCAGGTCGCAGAGCACAATCAAATCGCACATCATTGCGACCAGTGCGATAAGAAATTCTTGAGACCCTCCGAGCTCGCCGAGCATAAGAACACTCATCTGCGTGTGAAGTTTTATCCTTGCAGTGTTTGTTCAAACTCCTACAGTACGCCACAAAAGTTATCTGAACACGTCCAGAATGTTCATCCCGGAGTGGGTCAGTACGCTAGCATGGAGTCCGAGTTTTACTGCGACATTTGTATAAGATCCTTTAAGAGTCGCCAAGCCTATTCCAACCATATGCGCATACATGCAAAAGTGCCAACTACCAACAGGAAACCTGGGGACTTCAAGAGTTTTGCGCCACAAATAATCGGAAAGCCTATAAAACTAGCGGTCCAACAGCATCCTCCCAACTTCGTCTTTAAACCTAACTGCAACGTTCCTAATGCCCCCTATTCTTGTGACATATGTGGTAAAGGCTTCATGCATAAAAAGAATATTTGGAAACATAAAAAAGTTCTTCACGCCGACCTCGTTAACGACAGAAACGACAGCGAAGAAAACACCATGCATGCTTCTACAGAAGAAGACGATTGTAATAATATTGATGAAAATGGGGCTGTTCTGTCTACACCACAGTTCAATAGTTTCAATTTTACTAATTTCAATAATGCGCAACATCAGCAACAACAAGACCCGATGCCATTCTCGTGTGAACTTTGTTTCAAACGATTTCCGCTTAGAACTAGTTTGTGGAAACATAAACGAGCAAAACATGGTATCATTAACATCAACGCGAGTGGCAACGAGACGCAAGTACAAGTCACTCCAAATGAAGCCGGCAGCAGATCCAGTTGTACCATTTGTAGAATTACCTTCTCAGACAAGAAGTCTTACTATCGCCATAGAAAGAATGTTCACAAATCGACTACGCAAATGTGTAAAATATGCGGTAAGCCACTTAACTCAACGTTGGAGTTGTACGAACATCTGAAGGCCGCACACGCCCGTGAGCTCTTAGGGTACGACGCAAGTCAAGGTTCTAGTAAGATGTCAGATATAAAGGAAGACATCGACATGGATTACGAAAACGACCAAGACTCCGCCGATCCCAGTGTGGAGTATCAAGCTCGTTATCCGTGCGACACGTGTGGTAAACATTTCGTTGGCTTACTAGCGCTGCAGAATCACCAGTGCATAACTCAAATAGTATCTCAACCGCAAACGTTCGATTGTGAAATCTGCCACAAGAGTTATACCTCCATATCGGCACTGAAGAGTCACCGTGGTTGGCATTTGCGGTCACCAGACGGCAAAGCGGCTGCTAATAACAGTGGACTTTGGATGCCTCAGCATAAAGTGACAAGTAAAGTGAGCAAACACGAAGTAGTGGATCCTGTCCAGTTGGCGCGAGTGCAGCACGTGCCGCCCGCTGCCGCCGCAGCTAAAAGGAGACTGCCACCAGAAGTGGAAGTCACCGTCGTGAATCCAAACAAAAAGTTGCGCTCAGACGATTCCGTAGAAATGGACCAATCTGGCGCCTCCGAAGACAAATATTGTACGATTTGTGACAAGGAGTTCACGAAGCGCGCCGCTTACCAGCGTCATATGGACGAGGTTCACCAGCCGAACTCGGTGTTTTGCCCTGTATGCGACAAGAGTTTCACACGGAAGTCGACTTTGCTCGTTCACATGAAGAAGCATTACGAGGGCGGGGAAGGAAGTTCGGCGGGCACCGCTCAGCCTGAGGACGACGCGTACGCATGTGACGTTTGTGGAGCGCAGTATGATAACGAAAACGCGTTGAAAAACCATCAAATTAGACAACACGGTGAAGAGTCTGGCGAATCTGAGGACGATGGCGAAGTACCGATAGCCCAGCCGGGCGAGTTCACGTGTGGACAGTGCGGGGACGGGGTGGCAACGCCGCGCGACCTCATAGCCCACCGCTCTATGCACGCGACACCCACCAAATTCTTCTGCAACATCTGCAAAGTGTACTTCGCCAGAGCCCTAGATTTGTCCTCGCACACGCGCGCGAGGCACGCCGATAACGAAAAGGTGTTCTTCCCGTGTGCCATGTGCGATCGGTTCTATATGAACAAGAAGAGTCTACAACGACACATCGAAATGGCGCATTGA
- Protein Sequence
- MSVNCDRVCRLCLSFRGELVPIFPTTSSDESEPPVLASKIKDCVSIQISENDDLPTNVCRKCVDNVNNWHIFKTVCERTQNKLELLIKKDGSQLEEIKIKSEPLSDGAYDDGVVIDGSYPDNENATASAKVQPEGPPILASLGLTPRSDKGVESEKDDEEEEEDEEAPEAVQKYPKVQRMPEVSITVMRSSGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTSHSFDRYTNKITNKKQPSHMQPKLRPNPFNPKARLMPNPISHKMQLISKPIPMPTKMVPHKMAPSPKPVLVKTNKGSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVVVTEPEIIHSGPESPETLISEPEIASFQVEAILSEPDGYDKQPDGYDHQQDGFDQQADGYDQQGGDEEGEDGDANNQTQNYDTVDMESDNEIEIAREQGNELEEEDQNMETENNQNDEENNADVQSDTERHNTEENGENEENLASGDNGEYKTTENYAEGDEGNENEEREINEHNDNHHENLDEDDEELPPMELAPVVEINEDMQTNSYNSEHNEEEEEEDAEETTELNDTTDGVEGIKEIDPDKLYVTKTQRDFIAKYRDVIQQINTKRCLCCDREHPRRKAVIQHLQKNGQKVPKHTCYNCVVTFGHIGALLSHMRSNSCTNLWKIIYNENGITDDLVLEDPKDNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPLVCVHCGVRFKDKSLIKKHIRNGECTVYIACDLCSETFINMQDFNDHALSAHAGSFDQSDNQNKCVDGRPTDCPICGKKNSSYPNLVKHLKAIHNEEKPHYCQHCDVKFEQAADLNKHIYMEHSDRSLGMQSHEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQNVHPGVGQYASMESEFYCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDFKSFAPQIIGKPIKLAVQQHPPNFVFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVNDRNDSEENTMHASTEEDDCNNIDENGAVLSTPQFNSFNFTNFNNAQHQQQQDPMPFSCELCFKRFPLRTSLWKHKRAKHGIININASGNETQVQVTPNEAGSRSSCTICRITFSDKKSYYRHRKNVHKSTTQMCKICGKPLNSTLELYEHLKAAHARELLGYDASQGSSKMSDIKEDIDMDYENDQDSADPSVEYQARYPCDTCGKHFVGLLALQNHQCITQIVSQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPVQLARVQHVPPAAAAAKRRLPPEVEVTVVNPNKKLRSDDSVEMDQSGASEDKYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSAGTAQPEDDAYACDVCGAQYDNENALKNHQIRQHGEESGESEDDGEVPIAQPGEFTCGQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00035015;
- 90% Identity
- -
- 80% Identity
- -