Dsac016418.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- -
- Assembly
- GCA_014843785.1
- Location
- JACGTY010013053.1:1-9546[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0038 0.34 12.2 1.0 3 23 210 231 209 231 0.96 2 23 0.27 24 6.3 0.3 1 22 638 659 638 659 0.95 3 23 5.3 4.7e+02 2.3 0.3 1 22 700 721 700 723 0.82 4 23 0.0035 0.31 12.3 0.3 3 21 734 752 732 753 0.94 5 23 0.72 64 5.0 0.1 3 23 762 783 760 783 0.89 6 23 0.011 1 10.7 0.1 3 23 804 825 802 825 0.94 7 23 0.00036 0.032 15.4 2.0 1 23 831 854 831 854 0.95 8 23 0.099 8.8 7.7 0.0 1 23 880 903 880 903 0.90 9 23 0.0043 0.39 12.0 3.5 1 23 908 930 908 930 0.97 10 23 0.012 1 10.6 0.2 1 23 936 959 936 959 0.95 11 23 0.00082 0.073 14.3 1.3 1 23 972 994 972 994 0.98 12 23 0.00014 0.012 16.7 1.8 1 23 1043 1066 1043 1066 0.97 13 23 0.0054 0.48 11.7 1.8 1 23 1125 1148 1125 1148 0.96 14 23 0.0019 0.17 13.1 2.1 2 23 1174 1196 1173 1196 0.95 15 23 0.069 6.1 8.2 0.1 2 23 1202 1224 1201 1224 0.93 16 23 0.0078 0.7 11.2 0.2 1 21 1268 1288 1268 1289 0.95 17 23 0.00097 0.087 14.0 0.6 1 23 1299 1321 1299 1321 0.93 18 23 8.9e-05 0.0079 17.3 0.3 2 23 1408 1430 1408 1430 0.93 19 23 2.6e-07 2.3e-05 25.3 1.4 3 23 1437 1457 1436 1457 0.98 20 23 0.0039 0.35 12.1 0.6 1 23 1475 1497 1475 1498 0.95 21 23 0.15 13 7.1 0.0 1 23 1519 1541 1519 1541 0.97 22 23 0.022 1.9 9.8 0.6 1 23 1547 1570 1547 1570 0.95 23 23 0.0002 0.018 16.2 0.4 1 23 1578 1601 1578 1601 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTAGTGCCTATTTTTCCTACCACCAGTTCGGATGATTCTGAACCTCCCGTTCTTGCATCGAAAATAAAGGATTGTGTGTCTGTACAGATAAGCGAGAATGACGACCTGCCGACGAATGTCTGCAAGAAATGTATGGATAATGTCAATAACTGGCACATATTCAAGACAGTATGTGAAAGGACACAAAATAAACTAGAGCTACTGATAAAAAAAGATGGAAGCCAACTAGAAGAGATTAAAATAAAGAGTGAACCTTTATCTGATGGAGCATATGATGATGGTGTAGTCATTGATGGCTCATACCCGGATAATGATATTGCTGCAGGGTCAGCTAAAGTGCAGCCAGAAGGCCCTCCAATCTTGGCGTCACTGGGCCTCACTCCAAGGAGTGATAAGGGAGTCGACACTGAGAAAGACGAGGATGAAGATGAAGAAGAGGAGGAAGATGAAGAAGCTTCAGCCAAAAAACATGAAAATGCTCCACGAATGCCTGAAGTATCTATAACTGTTATGCGATCATCTGGTGAAACACTGCACGCTCGCCAAGGTATCCAACAACTTGCCTCTAAAGATTGTCTTGTATGCGGTCGTTCATATAGGTATTCTCATAATGCCAGACGACATGAACTAACTGCTCATAGTTTTGATAGGTATACTAATAAAATTACACACAAAAAGCAACCTTCGCGGTTCGCACAACCAAAATTGAGGCCAAATCCTTTTAATCCAAAGGCAATTAAAATGCAACTAATTTCCAAACCTATGCCTATGTCGAATAAAATGATTCCACATAAACATGTGGCACCTCCGAAACCTGTTCTTGTGAAATCTACCAAAGGGGCTCAGAACAATCTACCTTATCCATTGCGTATTAAAGCTTTGAAGGATTTGCAAATCAAGAAAAAGGAACCTCAAATTTTGAAAACTCTTTTGACGTCAAAACCGGAGGTTGTCGTAACTGAACCTGAAATCATACATTCAGGACCAGAAAGCCCAGAAACTTTGATATCTGAACCAGAAATTGCTTCTTTCCAAGTTGAGGCAATGCTGTCGGAGCCAGATGGCTATGATAAGCAGACACAAGGTTATGATACGCAACAAGAGTCTTACGATCACCAGAACGATGGATATGAACAGCAAATTGATGGTTACGATCAACAGGGCGGCGAAGAAGCAGAAGAGGGCGATGGCAACAATCAAAACCAACATTATGACACTGTTGATATGGAATCTGACAATGAAATTGAAATTGCCCGGGAACGAGAAAACGAAGTTGACGAAGAAGATCAAAATATGGAAATGGAAAATATCCCGAATGACGAAGAACATAATGCAGATGCTACACAAAGTGACAATGAGCGAAATAACACAGAAGATAATGAGGAAAACGTTGGTTCGGGACCACCATCCAACAGCGAGTATAAAACTGAAGAGAATTACGAAGAAGGCGATGACAGAAACGATAATGAAGAAAGAGAAAACGTGGAACATGAAAATCACGATGAGAATGCCGAAGAGGATGACGAAGATCTTCCTCCAATGGAAATAGCGCCAGTCGTGGAAATTAATGAAGATATGCAAACGAATTCATATAACAGTGAGCAAAATGAAGAAGAGGAGGAAGAAGAAATGGAAGAAACCACAGAATTGAATGACACAACAGACGGTGTTGAGGGTATCAAAGAGATTGATCCAGATAAATTATATGTGACAAAGACGCAGCGTGATTTCATTATGAAATATAGAGACGTAATTGAACAGATCAATACAAAACGATGTCTTTGCTGCGACAGAGAACATCCTCGCAGAAAAGCTGTTATACAGCATTTACAGAAAAACGGCCACAAAGTTCCGAAACACACGTGCTATAATTGTGTTGTTACTTTTGGCCATATTGGCGCACTTTTGAGTCACATGAGATCCAACTCATGCACTAATCTCTGGAAAATTATATATAACGAAGATGGAATTACCGATGACTTAGTTTTGGAAGATCCTAAAGATAATAAAGTTCAATATAAAGACATTTTCAATGCAAGGTCGTATGCTTGTAAATTATGCCCAGCGAAGTTCCAATTGAAACAATTTATAATGAAACACGTGTTGGACGTTCACGAAGATGGCCAATCTCGGGTACCGCTCGCATGCGTTCACTGTGGAGCTAGATACAAGGATAAGAGTTTAATCAAGAAGCACATTCGCAACGGCGAATGCACTGTCTACATCGCTTGTGATTTATGCACAGAGAAGTTTGTAAGCATGCAAGATTTTAACGACCATGCCCTGGGCGTTCATGCCGGAAATTTCGATCAATCTGATAATCAGAATAAGTGCGTCGACGGACGGCCGACAGATTGTCCAATATGTGGCAAGAAGAACAGTAGTTATCCGAATTTGGTAAAACATTTGAAGGCCATACACAACGAAGAGAAACCCCATTATTGTCAACACTGTGACGTTAAATTCGAGCAAGCTGCTGATCTTAACAAGCATATTTATATGGAACACTCAGATAGAAGTTTGGGCATGCAAAACAACGAACCGGATATGTCTCTCGTGAAAGAAGAAGCCGAAGAATACCACTATTCGTGCACAGAATGTAATGCTATATTCGAAACTGTCGATGCATGGACTGATCATCAGGTTGCGGAACACAATCAGGTCGCACATCATTGCGATCAGTGTGACAAGAAATTCTTGAGACCTTCAGAGCTCGCCGAGCATAAGAACACCCATCTGCGTGTGAAGTTTTATCCTTGCAGCGTTTGTACAAACTCATACAGTACGCCGCAAAAGTTATCTGAACACGTTCAGAATGCGCACCCTGGAGTTGGTCAATACGCATCAATGGAATCTGAATTCTACTGCGATATCTGTATAAGATCATTCAAGAGTCGCCAAGCGTACTCCAATCATATGCGCATACATGCTAAAGTCCCAACTACTAATAGAAAACCTGGCGACGCTAAAGGGTTTGCACCACAAATAATCGGCAAGCCTATCAAACTTGCTGTCCAACAGCATCCATCTAACTTTGTGTATAAACCAAATTGCAATGTTCCTAACGCTCCTTATTCATGTGATATATGTGGTAAAGGTTTCATGCATAAGAAAAATATTTGGAAACATAAGAAAGTACTTCACGCTGACCTTATTAATGATAGAAACGATAGTGAAGAAAATACAATGCACGCGTCTACTGAAGAAGACGAGTATCATAATCCTGATGAAAACGGAGCTGTGCTGTCTACACCGCAGTTTAATAGTTTCAATTTCACAAATTTCAATAATGCGCAACAGTCGCAAGACCCGATGCCGTTCTCATGTGAACTTTGTTTCAAACGATTCCCGCTCAGAACTAGTTTGTGGAAGCATAAACGTGCAAAACACGGTATTATTAACGTTAACGCTGGCGGCAATGATACTCAAGTACAAGTGACACCCAGCGAAGCGGGTAATAGATCGAGTTGTACGATTTGTAGGATAACCTTTTCCGACAAAAAGTCTTACTATCGACATAGAAAGAATGTCCATAAGTCGACTACACAAATGTGCAAAATATGCGGAAAACCGCTAAACTCGACGTTAGAGTTATATGAACATCTAAAGGCAGCACATGCCCGTGAATTGTTAGGGTTCGACACGAGTCAGGGGTCTAGTAAAATGTCAGATGTGAAAGAAGAAATGGATATGGATTACGAAAACGACCAAGATTCGGCGGACCCTAGCGTGGAGTATCAAGCTCGTTATCCTTGCGACACGTGTGGTAAACAATTTGTGGGTTTACTAGCATTACAAAATCATCAGTGCATAAATCAAATTTCATCACAGCCTCAAACTTTCGATTGTGAAATATGTCACAAGAGTTACACATCAATAGCGGCGCTAAAAAGTCACCGCGGTTGGCATTTACGATCGCCTGATGGTAAAGCGGCCGCAAATAACACCGGACTTTGGATGCCTCAGCACAAAGTGACGAGTAAAGTTAGCAAACACGAGGTTGTTGACCCCGTGCAATTAGCGCGCGTAACACACGTGGCGCCGGCGACTACCGTAGCCAAGAGGAGACTTCCACCTGAAGTGGAAGTAACCGTCGTGAATCCGAATAAAAAACTGCGTTCTGATGATTCCGTCGAAATGGAGCAGCAAGGCGCCATCGAGGATAGATACTGCACGATTTGTGACAAAGAGTTCACGAAGCGAGCTGCTTACCAACGTCACATGGACGAAGTGCATCAGCCGAACTCCGTATTCTGTCCAGTGTGTGACAAGAGTTTTACGCGGAAATCTACTTTGCTGGTTCACATGAAAAAGCATTACGAGGGCGGAGAGGGTAGCTCCTCGGGAATGGCTCAGGAAGACGAAGGGTACGCGTGCGATGTGTGTGGAGCTCAGTATGATAACGAGAAAGCGTTACAGAATCATAGGACCAGACATCACGGCGAAGAATCTGGTGATTCTGAGGATGATGGTGCTGTAGCAGTTGCTCAGCCTGGTGAATTCACTTGTGCTCAATGCGGAGACGGTGTTGCCACACCTAGAGATCTTATCGCCCACCGAGCTATGCACTCGACACCCACCAAATTCTTCTGCAACATTTGCAAAGTTTATTTCGCTAGAGCTTTAGATTTGTCCTCGCATACGCGCGCGAGACACGCCGACAACGAGAAAGTGTTTTTCCCGTGTGCCATGTGTGACCGTTTCTATATGAACAAGAAGAGTTTGCAGCGGCACATCGAAATGGCCCATTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELVPIFPTTSSDDSEPPVLASKIKDCVSVQISENDDLPTNVCKKCMDNVNNWHIFKTVCERTQNKLELLIKKDGSQLEEIKIKSEPLSDGAYDDGVVIDGSYPDNDIAAGSAKVQPEGPPILASLGLTPRSDKGVDTEKDEDEDEEEEEDEEASAKKHENAPRMPEVSITVMRSSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITHKKQPSRFAQPKLRPNPFNPKAIKMQLISKPMPMSNKMIPHKHVAPPKPVLVKSTKGAQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVVVTEPEIIHSGPESPETLISEPEIASFQVEAMLSEPDGYDKQTQGYDTQQESYDHQNDGYEQQIDGYDQQGGEEAEEGDGNNQNQHYDTVDMESDNEIEIARERENEVDEEDQNMEMENIPNDEEHNADATQSDNERNNTEDNEENVGSGPPSNSEYKTEENYEEGDDRNDNEERENVEHENHDENAEEDDEDLPPMEIAPVVEINEDMQTNSYNSEQNEEEEEEEMEETTELNDTTDGVEGIKEIDPDKLYVTKTQRDFIMKYRDVIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNSCTNLWKIIYNEDGITDDLVLEDPKDNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPLACVHCGARYKDKSLIKKHIRNGECTVYIACDLCTEKFVSMQDFNDHALGVHAGNFDQSDNQNKCVDGRPTDCPICGKKNSSYPNLVKHLKAIHNEEKPHYCQHCDVKFEQAADLNKHIYMEHSDRSLGMQNNEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSVCTNSYSTPQKLSEHVQNAHPGVGQYASMESEFYCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDAKGFAPQIIGKPIKLAVQQHPSNFVYKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLINDRNDSEENTMHASTEEDEYHNPDENGAVLSTPQFNSFNFTNFNNAQQSQDPMPFSCELCFKRFPLRTSLWKHKRAKHGIINVNAGGNDTQVQVTPSEAGNRSSCTICRITFSDKKSYYRHRKNVHKSTTQMCKICGKPLNSTLELYEHLKAAHARELLGFDTSQGSSKMSDVKEEMDMDYENDQDSADPSVEYQARYPCDTCGKQFVGLLALQNHQCINQISSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQHKVTSKVSKHEVVDPVQLARVTHVAPATTVAKRRLPPEVEVTVVNPNKKLRSDDSVEMEQQGAIEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSSGMAQEDEGYACDVCGAQYDNEKALQNHRTRHHGEESGDSEDDGAVAVAQPGEFTCAQCGDGVATPRDLIAHRAMHSTPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00035015;
- 90% Identity
- -
- 80% Identity
- -