Agen050975.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- -
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000851.1:332792-335161[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.9e-06 0.00078 21.5 4.2 1 23 7 30 7 30 0.95 2 22 0.00033 0.066 15.5 0.3 2 23 36 58 35 58 0.95 3 22 5.7e-06 0.0012 21.0 0.3 2 23 67 89 67 89 0.97 4 22 2.4e-05 0.0049 19.0 3.8 2 23 98 120 97 120 0.89 5 22 8.3e-05 0.017 17.3 0.8 2 23 128 150 127 150 0.94 6 22 1.1e-06 0.00022 23.2 0.5 2 23 159 181 158 181 0.95 7 22 2.5e-07 5e-05 25.3 1.2 1 23 187 210 187 210 0.98 8 22 0.38 77 5.8 2.5 2 23 219 241 218 241 0.89 9 22 0.0059 1.2 11.5 0.1 1 23 256 279 256 279 0.98 10 22 3.9e-05 0.0079 18.4 0.4 1 23 307 330 307 330 0.98 11 22 5.5 1.1e+03 2.2 0.7 2 21 338 357 337 358 0.90 12 22 0.017 3.4 10.0 1.8 2 23 367 389 367 389 0.95 13 22 0.0048 0.98 11.8 6.8 1 23 411 434 411 434 0.96 14 22 2.9e-05 0.0059 18.7 0.7 2 23 441 463 440 463 0.96 15 22 2.9e-05 0.0059 18.8 2.2 2 23 470 492 469 492 0.94 16 22 0.0068 1.4 11.3 2.2 1 23 498 521 498 521 0.97 17 22 0.17 35 6.9 7.1 2 23 529 551 529 551 0.95 18 22 0.0013 0.25 13.6 0.1 1 23 558 581 558 581 0.97 19 22 0.0086 1.7 11.0 2.3 1 20 588 607 588 611 0.90 20 22 0.016 3.2 10.1 2.7 3 23 626 647 625 647 0.91 21 22 2.6 5.1e+02 3.2 0.1 2 17 668 683 667 684 0.90 22 22 2.1 4.2e+02 3.5 0.7 1 16 697 712 697 714 0.87
Sequence Information
- Coding Sequence
- ATGTATTCAAATCTAGATTTTGTCTGCGACTATTGCAGTCGAACCTTCACTCGGAAATACAACTTACAAACGCACATAGAGAACTGCCATCTCAACTCATCATGCTACTGCGACATTTGCGACCAAACGTTTGGTAGTCCCGCCGGCTTACAACTACATTTATCCAGAGGCCATAACCGGCATGGCCAACCTTTCCCAGAATGTGATATCTGCGGGCGAATTTTTActagaaaacaaaatattacatcCCATATGATCACAGTTCATTTACAAGGTATAGGTCCGGAAATAAAATGTCATACTTGCGATAAAACTTTTACTACTGAGAGAAACTTAAAGAGGCATAACAGCCAATTGCACAATCCTGATGCTGAAAACTTAACATGCGATAGTTGTAATAAAGCATTTAAAGGAAAGCACTCATTAATAGCTCATATGCAAGCTATGCATAATTTAGCAGACAAGGGCATCATCAAATGCCCGCTCTGTGATAAAGTCTACACCAACAACAGAAATCTGAAACGCCACGTAGAAATGTATCATGGTGAAAAAGGAGAATTCAAATGTGAAATATGCCCTAAAGTTTACACTTCGAACCAGAGCTTAAGGCGGCATGTTAGAACAAGACATTATTCGGACGATGGAGACACGTGCGTTTGTGAGTATTGTAATAAACATATCGTCGGAAAAGAAAATTTGGATAGTCATGTGTCCTTCTTTCATAAACTCGATGATGATATGGATAGCGACTCAGCTTCTTTGTATTATcaatgtgaaagttgttccaaGGGATTTGGCGAAGAGCCTTTGCTGAGACAACATGTCAAAATGGAGCATTCATTTAACACTTTTTATAATTACTGCCGAAAATCTTTGTTGAGACAAGAAGACGTCAGTAAAGCCAGCAAAAGCATGTTTTACAAATGCGAATATTGTGTCAACGCTTTTAGCAGTGTTTATGAATTGAAAGACCACATGAGGGTGAATCATGATAGGGAATATTCTCTATCTACCTGCAACGTTTGTTTCGATAAGTTTTATAGCAAAGAAACCATGTCTGATCATAAAAAGATTTGCTTGCCTCCGCCTAACGTAAACCGCTGTAGTCACTGCGACAAATTATTTACAGATATATCTAGTTTAGACTTCCATATACGTATTTTTCATCCCCAAGCTCAAATCGCTGATTCTAATATAAGTTCAACAAACGTTGATGATACTTCCGATAATTATAAATGTTCGCATTGTGACCGAGTATATTATAGTGATAGATCTCTCAAACATCACACAAAACTAAAACACACAACTGATGAAGCTGTAGAATGTGAATATTGCGGTAAGATTTGCAGTAATAAATACTACTTAGCGTCCCACACTAAAATAGTGCACAGTAACGATTCCTGGTCGAAATGTGATTATTGTGACAAGCAATTTAAATCAAAGAGGAATATTCGGAGACACATAGAATATACGCATCTAGGAATGCAAAGATATAAGTGTATTGAGTGTGAAACACTTTTTAAAGAGAAGAGAAGTTTAAGGAAACATGTAAGGACTAAACATCCGAATTCGGCAGCTTTTCCTCAATGCCACATTTGCCACAAGAGATTCGAGTCTGCCAAGTCCTGCAAGATTCACCTAAAATTATTACACTCCTTCAATATGAACACCTTTCCTTGTGATCTCTGCTCAGTATCGTTTGGTTCGAATGCGGCATTGTCTATTCATTTGCAAACGAAGCATTTGGCAAAAGACGAAATTTACAAATGCGAAGAATGCAACTTAGTATTTAAAGGGCAAGAAAAATTTGAGCAGCACAATGATCTATGCCATGTTAATTTGGTCCCGAATATAAAGCAAAAGGTTTTGCCTCGATGTATTATATGTATGAAAGATTTTAGCACACGAAAGACATTGAAAAGACATATAAAGAAATTCCACgatgattttgatgttgatgaGCTGGCCACTTTTGGCTCGAGGCGTCGTAACTTTAATGTGGAATGCGAAGATTGTATTAAAAACTTTAGTGACGCATTTCACTTCAATATTTATCAGAAACTTAAGCATCTTAGAGACTCGGTGATCTTCAAATGCGAGTCCTGTCAAACTTCTTACAATTCGTTAGAGTATTTCATACAACGATATAAGCTGACAAATTGTGCTTTTAAAGGGAAAATTATTTTGAGCGACCTTTGCACTGCTGAAATGAGTGATGGTGAATCTTCGTATAATTGCTTCGGGTCGTATCATGAGATGATGGAACCGGAGAGTACTACAAATGATGTTCAAGTAAAAATTGAGCCATTAGAAGAGATGGAACCTTCGATCGTGATAGAACACGTAAAGACTGAACCGTGGACGCCTTAG
- Protein Sequence
- MYSNLDFVCDYCSRTFTRKYNLQTHIENCHLNSSCYCDICDQTFGSPAGLQLHLSRGHNRHGQPFPECDICGRIFTRKQNITSHMITVHLQGIGPEIKCHTCDKTFTTERNLKRHNSQLHNPDAENLTCDSCNKAFKGKHSLIAHMQAMHNLADKGIIKCPLCDKVYTNNRNLKRHVEMYHGEKGEFKCEICPKVYTSNQSLRRHVRTRHYSDDGDTCVCEYCNKHIVGKENLDSHVSFFHKLDDDMDSDSASLYYQCESCSKGFGEEPLLRQHVKMEHSFNTFYNYCRKSLLRQEDVSKASKSMFYKCEYCVNAFSSVYELKDHMRVNHDREYSLSTCNVCFDKFYSKETMSDHKKICLPPPNVNRCSHCDKLFTDISSLDFHIRIFHPQAQIADSNISSTNVDDTSDNYKCSHCDRVYYSDRSLKHHTKLKHTTDEAVECEYCGKICSNKYYLASHTKIVHSNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSAAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTFPCDLCSVSFGSNAALSIHLQTKHLAKDEIYKCEECNLVFKGQEKFEQHNDLCHVNLVPNIKQKVLPRCIICMKDFSTRKTLKRHIKKFHDDFDVDELATFGSRRRNFNVECEDCIKNFSDAFHFNIYQKLKHLRDSVIFKCESCQTSYNSLEYFIQRYKLTNCAFKGKIILSDLCTAEMSDGESSYNCFGSYHEMMEPESTTNDVQVKIEPLEEMEPSIVIEHVKTEPWTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00284738; iTF_00034986; iTF_00284747; iTF_00035918; iTF_00035929; iTF_00382920; iTF_00448342;
- 90% Identity
- iTF_00284738; iTF_00034986; iTF_00284747; iTF_00035918; iTF_00035929;
- 80% Identity
- iTF_00034986;