Clat053455.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- -
- Assembly
- GCA_949710035.1
- Location
- OX453321.1:13856305-13858656[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.8e-06 0.0003 22.8 4.5 1 23 8 31 8 31 0.94 2 21 0.0021 0.36 13.1 0.6 2 23 37 59 36 59 0.94 3 21 2e-06 0.00034 22.7 0.1 2 23 68 90 68 90 0.97 4 21 5.3e-06 0.0009 21.3 1.0 2 23 99 121 98 121 0.95 5 21 0.0036 0.6 12.4 2.7 2 23 129 151 128 151 0.97 6 21 6.4e-05 0.011 17.9 8.1 1 23 155 178 155 178 0.97 7 21 7.8e-07 0.00013 23.9 1.1 1 23 184 207 184 207 0.98 8 21 0.67 1.1e+02 5.3 0.8 1 23 215 238 215 238 0.90 9 21 0.00067 0.11 14.7 2.8 1 23 254 277 254 277 0.98 10 21 5.2e-06 0.00088 21.4 0.7 1 23 305 328 305 328 0.98 11 21 0.54 91 5.6 1.3 2 22 336 356 335 356 0.94 12 21 0.017 2.8 10.3 2.5 2 23 365 387 365 387 0.96 13 21 0.009 1.5 11.2 5.8 1 23 409 432 409 432 0.96 14 21 0.00022 0.038 16.2 0.7 2 23 439 461 438 461 0.96 15 21 3.5e-05 0.0059 18.8 2.2 2 23 468 490 467 490 0.94 16 21 0.0081 1.4 11.3 2.2 1 23 496 519 496 519 0.97 17 21 0.21 35 6.9 7.1 2 23 527 549 527 549 0.95 18 21 0.00038 0.063 15.5 0.1 1 23 556 579 556 579 0.97 19 21 0.01 1.7 11.0 2.3 1 20 586 605 586 609 0.90 20 21 0.019 3.2 10.2 2.7 3 23 624 645 623 645 0.91 21 21 2.7 4.6e+02 3.4 0.3 1 15 695 709 695 712 0.85
Sequence Information
- Coding Sequence
- ATGTACGTCAACCTTTTAGACTTCTTCTGTGACTACTGCGGTCGTACTTTCACTCGGAAGTACAACTTACAAACCCACATTGAGAACTGCCATCTCAATACATCGTGCTACTGCGACATTTGCGACCAGACTTTTGGTAGTCCAGCTGGCTTTCAACTGCATTATTCCAGAGGTCACAATAGTAACGGCCAGCCTTACCCAGAATGTGATATTTGCGGGCGAATTTTCGCCAGAAAACAAAACCTTACTTCTCATATTATCACGGTCCACCTACAGGGCTTAGGCACCGAAATAAAGTGTGAATTGTGTGAGAAAACATTTGCTACAGAAAGAAATTTAAAGAGACATATGAGCCAAAATCATAATCCGAACTCAAACAATACAACTTGCGACACCTGCAAGAAAACTTTCCATGGAAAGCTTTCTTTGATCACTCATATACAAACTATGCACAATCAATATCACAAATGCCACTTGTGCGATAAAGTCTGCACCAACAACAGGAATTTAAAAAGACACATTGAAAGGTTTCACGGCGAAAAGGGGAAGTTTAAATGTGAGATTTGCCCTAAAGTGTACACTTCAAACCAGAGCTTACGACAACATGTGAGAACTAGACACTACTCTGAAGACGGAGACACTTATAGCTGCGACTATTGCGCCAAACACATCGTCGGCAGGGATAATTTGGGCACCCATGTTTCCTTCTTTCATAAACTTGAAGATGATTTACAAAGTGATTCGGCTTCCTTAAGTCTTTATCAATGCGAGACATGTTCCAAGTCGTTTTGCGCAGAAACCCTGTTACGACAACACGTCAAAAAAGAACATCCATTCCACGCTTTTTATAGCTACTGCAGAAAATCTTTGTTGAAACAGGAAGACGCGAAAGAGAATAGTAGGAGCTTCTTCTACAAGTGTGAGTACTGTAATAACGCATTTACTAGTGTTTACGAATTGAAAGACCACATGAGAGTGAACCATGACAAGGAATACCTGCTTTCAACCTGCAATGTTTGCttcaataaattttatagcaaaGAAACCATGGTTAACCACAAAAAGACCTGCTTACCTCCACCAGACGTCAACCGCTGTAGTCACTGCGATAAGTTATTCACAGATATATCTAGTTTGGAATTCCATACGCGCATTTTTCATCCTCAAGCTCAAATCGCTGATTCTAACATAACATCGACAAACTTCGATGACGGTTCAGATAATTATAAATGTGCGCATTGCGACAGAGTCTACTACAGTGATAGGTCTCTCAAACATCATACGAAGCTTAAACACACCACAGATGAAGCTATGGAATGTGGATTTTGCGGCAAGATTTGCAATAATAAGTACTATTTAGCTTCCCATATTAAAATAGTTCATAACAATGATTCGTGGTCGAAATGTGATTATTGCGACAAACAATTCAAATCAAAGAGGAATATACGAAGACATATAGAATATACGCATTTGGGAATGCAAAGATATAAGTGTATTGAGTGTGAAACTCTATTcaaagagaagagaagtttgagGAAACATGTGAGGACCAAACATCCAAATTCAGCAGCTTTTCCTCAATGCCATATATGCCATAAAAGATTTGAATCTGCGAAATCCTGCAAAATACACTTAAAATTGCTACACTCGTTTAACATGAATACCTTTCCTTGTGATCTTTGTTCAGtatctttcaattcaaatgcaGCTCTCTCCATTCATTTGCAAACAAAGCATTTGGCAAAAGATGAGATTTACAAATGCGAGGAATGTAATCTTGTCTTCAAAGGTCAAGAAAAGTTTGAACAACACAACGACCTTTGCCATGTTAATTTAGTGCCCAATATCAAGCAGAAAGTTTTGCCTCGCTGCATTATATGTATGAAAGATTTTAGCACACGAAAGACTTTAAAGAGGCATATAAAGAAATTCCACGATGATTTCGACGTTGACGAACTAGCTACTTTTGGTACGAAACGTCGAAACTTTAACGTGGACTGCGAGGACTGTATTCAGAATTTCAGTGATGACTTTCACTTCAATATATACCAGAGGTTAAAGCATCTTAGAGATTCAGTGATCTTCAAATGTGAGTCATGTGACGCCTCTTACAATTCCTTAGAGTATTACATACAACGATACAAGCTGACAAATTATGCTTTTAAGGGGAAAATTATTCTGAGTGATCTTTGCACTGCTGAAATGAGTGATGGTGAATCTTCGTATACTGGTTTTGGGTCATTTCATGAAACTATGGAACCCGAAAGTACTACCAATGATGTGACTGTTAAAGTGGAAGTGTTAGATGATGAAGAAATGGAACAAGTGAAGACTGAACCTTTTTCGCCTTAA
- Protein Sequence
- MYVNLLDFFCDYCGRTFTRKYNLQTHIENCHLNTSCYCDICDQTFGSPAGFQLHYSRGHNSNGQPYPECDICGRIFARKQNLTSHIITVHLQGLGTEIKCELCEKTFATERNLKRHMSQNHNPNSNNTTCDTCKKTFHGKLSLITHIQTMHNQYHKCHLCDKVCTNNRNLKRHIERFHGEKGKFKCEICPKVYTSNQSLRQHVRTRHYSEDGDTYSCDYCAKHIVGRDNLGTHVSFFHKLEDDLQSDSASLSLYQCETCSKSFCAETLLRQHVKKEHPFHAFYSYCRKSLLKQEDAKENSRSFFYKCEYCNNAFTSVYELKDHMRVNHDKEYLLSTCNVCFNKFYSKETMVNHKKTCLPPPDVNRCSHCDKLFTDISSLEFHTRIFHPQAQIADSNITSTNFDDGSDNYKCAHCDRVYYSDRSLKHHTKLKHTTDEAMECGFCGKICNNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSAAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTFPCDLCSVSFNSNAALSIHLQTKHLAKDEIYKCEECNLVFKGQEKFEQHNDLCHVNLVPNIKQKVLPRCIICMKDFSTRKTLKRHIKKFHDDFDVDELATFGTKRRNFNVDCEDCIQNFSDDFHFNIYQRLKHLRDSVIFKCESCDASYNSLEYYIQRYKLTNYAFKGKIILSDLCTAEMSDGESSYTGFGSFHETMEPESTTNDVTVKVEVLDDEEMEQVKTEPFSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00035013;
- 90% Identity
- -
- 80% Identity
- -