Astr031099.1
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- -
- Assembly
- GCA_950108535.1
- Location
- OX467327.1:2964068-2966422[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.8e-06 0.00044 21.5 4.2 1 23 8 31 8 31 0.95 2 22 0.00036 0.033 15.6 0.2 2 23 37 59 36 59 0.95 3 22 7.1e-06 0.00065 21.0 0.3 2 23 68 90 68 90 0.97 4 22 3e-05 0.0027 19.0 3.8 2 23 99 121 98 121 0.89 5 22 0.0001 0.0093 17.3 0.8 2 23 129 151 128 151 0.94 6 22 4.3e-07 3.9e-05 24.8 0.5 2 23 160 182 159 182 0.96 7 22 3.1e-07 2.8e-05 25.3 1.2 1 23 188 211 188 211 0.98 8 22 1.2 1.1e+02 4.6 2.8 2 23 220 242 219 242 0.88 9 22 0.0073 0.67 11.5 0.1 1 23 257 280 257 280 0.98 10 22 4.8e-05 0.0044 18.4 0.4 1 23 308 331 308 331 0.98 11 22 1.5 1.4e+02 4.2 1.7 2 21 339 358 338 359 0.92 12 22 0.0038 0.35 12.4 1.8 2 23 368 390 368 390 0.96 13 22 0.0059 0.54 11.8 6.8 1 23 412 435 412 435 0.96 14 22 3.6e-05 0.0033 18.8 0.7 2 23 442 464 441 464 0.96 15 22 3.6e-05 0.0033 18.8 2.2 2 23 471 493 470 493 0.94 16 22 0.0084 0.77 11.3 2.2 1 23 499 522 499 522 0.97 17 22 0.21 20 6.9 7.1 2 23 530 552 530 552 0.95 18 22 0.0015 0.14 13.6 0.1 1 23 559 582 559 582 0.97 19 22 0.011 0.97 11.0 2.3 1 20 589 608 589 612 0.90 20 22 0.02 1.8 10.2 2.7 3 23 627 648 626 648 0.91 21 22 3.1 2.9e+02 3.2 0.1 2 17 669 684 668 685 0.90 22 22 2.6 2.3e+02 3.5 0.7 1 16 698 713 698 715 0.87
Sequence Information
- Coding Sequence
- ATGTACACAAATCTCCTAGATTTTGTCTGCGACTATTGCAGTCGAACTTTCACTCGGAAATACAACTTACAAACGCACATAGAGAACTGCCATCTCAATTCATCATGCTACTGCGACATTTGCGACCAATCGTTTGGTAGTCCCGCCGGCTTACAACTACATTTATCCAGAGGCCATAACCGGCATGGCCAACCTTTCCCAGAATGTGATATCTGCGGGCGAATATTCACCAGAAAGCAAAATATTACATCCCATATGATCACAGTTCATTTACAAGGTATAGGTCCGGAAATAAAATGTCATACTTGCGATAAAACATTTACTACTGAGAGAAACTTAAAGAGGCATAACAGCCAGTTGCACAATCCTGATGCTGAAAACCTAACATGCGATAGTTGTAATAAAGCATTTAAAGGAAAGCACTCATTAATTGCTCATATGCAAGCTATGCATAATTTAGCAGACAAGGGCATCATCAAATGCCCACTCTGTGATAAAGTCTACACAAACAATAGAAATCTGAAACGCCACATTGAAATGTACCATGGTGAAAAAGGGGAATTCAAGTGTGAAATATGCCCTAAAGTTTACACTTCGAACCAGAGCTTAAGGCGGCATGTTAGAACAAGACATTATTCTAACGATGGAGACACGTGCGTTTGTCAGTATTGTAATAAACATATTGTCGGAAGAGAAAATTTGGATAGTCATGTGTCCTTCTTTCATAAACTCGATGATGATTTGGATAGCGACTCGGCTTCTTTGGATTATCAATGCGAAAGTTGTTCCAAGGGATTTGGCGAAGAGCCTTTGTTGAGACAACATGTCAAAATGGAGCATTCATTTAACACTTTTTATAATTACTGCAGAAAATCGTTGTTGAGACAAGAAGACTTGAGTAAAGCCAGCAAAAGTATGTTTTACAAATGCGAATATTGTGTCAACGCTTTTAGCAGCGTTTATGAATTGAAAGACCACATGAGGGTGAATCATGATAGGGAATATTCTCTCTCTACCTGCAATGTTTGTTTCAATAAGTTTTATAGCAAGAAAACGATGTTTGATCATAAAAAGATTTGCTTGCCTCCGCCTAACGTAAAccgctgtagtcactgcgacaaATTATTCACAGATATATCGAGTTTAGAGTTTCATATACGTATTTTTCATCCCCAAGCTCAAATCGCTGATTCTAATATAAGTTCTACAAACGTTGATGATATTTCAGATAATTATAAATGTTCGCATTGTGACCGAGTATATTATAGTGATAGATCTCTCAAACATCACACAAAACTAAAACACACAACTGATGAAGCTGTAGAATGTGAATATTGCGGTAAGATTTGCAGTAATAAATACTACTTAGCGTCCCACACTAAAATAGTCCACAGTAACGATTCCTGGTCGAAATGCGATTATTGTGACAAGCAATTTAAATCAAAGAGGAATATTCGGAGACACATAGAATATACGCATCTAGGAATGCAGAGATATAAGTGTATTGAGTGTGAAACACTTTTTAAAGAGAAGAGAAGTTTAAGAAAACATGTAAGGACTAAACATCCCAATTCGGCAGCTTTTCCTCAGTGCCACATTTGCCACAAGAGATTCGAGTCTGCCAAGTCCTGCAAGATTCACCTAAAATTGTTACACTCCTTCAATATGAACACCTTTCCTTGTGATCTCTGCTCAGTATCGTTTGGTTCGAATGCGGCATTGTCCATTCATTTGCAAACGAAGCATTTGGCAAAAGATGAAATTTACAAATGCGAAGAATGCAACTTAGTATTTAAAGGGCAAGAAAAATTTGAGCAGCACAATGATCTATGCCATGTTAATTTGGTCCCGAATATAAAGCAAAAGGTTTTGCCTCGATGTATTATATGTATGAAAGATTTTAGCACACGAAAGACATTAAAAAGACATATAAAGAAATTCCACGATGATTTTGATGTTGATGAGCTGGCTACTTTTGGCTCGAGGCGTCGTAACTTTAATGTGGAATGCGAAGATTGTATTAAGAACTTTAGTGACGCATTTCACTTCAATATTTATCAGAAACTTAAGCATCTTAGAGACTCGGTGATCTTCAAATGCGAATCGTGTCAAACTTCTTACAATTCGTTAGAGTATTTCATACAACGATATAAATTGACAAATTGTGCTTTTAAAGGGAAAATTATTTTGAGCGACCTTTGCACTGCCGAAATGAGCGATGGTGAATCTTCGTATAATTGCTTCGGATCGTTTCATGAGATGATGGAACCGGAGAGTACTACAAACGACGTTCAAGTAAAAATTGAGCCGTTAGAAGAGATGGAACACGTAAAGACTGAACCGTTGACGCCTTAG
- Protein Sequence
- MYTNLLDFVCDYCSRTFTRKYNLQTHIENCHLNSSCYCDICDQSFGSPAGLQLHLSRGHNRHGQPFPECDICGRIFTRKQNITSHMITVHLQGIGPEIKCHTCDKTFTTERNLKRHNSQLHNPDAENLTCDSCNKAFKGKHSLIAHMQAMHNLADKGIIKCPLCDKVYTNNRNLKRHIEMYHGEKGEFKCEICPKVYTSNQSLRRHVRTRHYSNDGDTCVCQYCNKHIVGRENLDSHVSFFHKLDDDLDSDSASLDYQCESCSKGFGEEPLLRQHVKMEHSFNTFYNYCRKSLLRQEDLSKASKSMFYKCEYCVNAFSSVYELKDHMRVNHDREYSLSTCNVCFNKFYSKKTMFDHKKICLPPPNVNRCSHCDKLFTDISSLEFHIRIFHPQAQIADSNISSTNVDDISDNYKCSHCDRVYYSDRSLKHHTKLKHTTDEAVECEYCGKICSNKYYLASHTKIVHSNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSAAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTFPCDLCSVSFGSNAALSIHLQTKHLAKDEIYKCEECNLVFKGQEKFEQHNDLCHVNLVPNIKQKVLPRCIICMKDFSTRKTLKRHIKKFHDDFDVDELATFGSRRRNFNVECEDCIKNFSDAFHFNIYQKLKHLRDSVIFKCESCQTSYNSLEYFIQRYKLTNCAFKGKIILSDLCTAEMSDGESSYNCFGSFHEMMEPESTTNDVQVKIEPLEEMEHVKTEPLTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00035013;
- 90% Identity
- iTF_00035013;
- 80% Identity
- iTF_00035918;