Dsac024365.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- -
- Assembly
- GCA_014843785.1
- Location
- JACGTY010015023.1:5095-7386[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.9e-06 0.00035 21.6 4.5 1 23 8 31 8 31 0.95 2 19 0.00032 0.029 15.5 0.3 2 23 37 59 36 59 0.95 3 19 6.2e-06 0.00055 20.9 0.2 2 23 68 90 68 90 0.97 4 19 5.1e-06 0.00045 21.2 2.1 2 23 99 121 98 121 0.95 5 19 0.0001 0.009 17.1 1.8 2 23 129 151 128 151 0.94 6 19 5.4e-05 0.0048 18.0 1.5 2 23 160 182 159 182 0.94 7 19 3e-07 2.7e-05 25.1 0.9 1 23 188 211 188 211 0.98 8 19 0.67 60 5.1 3.4 1 23 219 242 219 242 0.87 9 19 0.0029 0.26 12.5 0.5 2 23 259 281 258 281 0.94 10 19 0.00074 0.065 14.4 2.9 1 23 309 332 309 332 0.98 11 19 0.014 1.3 10.4 2.6 2 23 369 391 369 391 0.95 12 19 0.00096 0.085 14.1 5.7 1 23 413 436 413 436 0.96 13 19 1.9e-05 0.0017 19.4 0.5 2 23 443 465 442 465 0.96 14 19 3e-05 0.0026 18.8 2.2 2 23 472 494 471 494 0.94 15 19 0.0069 0.61 11.4 2.2 1 23 500 523 500 523 0.97 16 19 0.5 44 5.5 7.1 2 23 531 553 531 553 0.95 17 19 0.0003 0.027 15.6 0.1 1 23 560 583 560 583 0.97 18 19 0.014 1.2 10.4 4.0 1 20 590 609 590 613 0.90 19 19 0.021 1.9 9.8 2.2 5 23 630 649 627 649 0.89
Sequence Information
- Coding Sequence
- ATGTACGCGAGTATGTTAGATTACATATGCGATTATTGCAAGCGCACTTTCACCAGAAAATACAACCTGCAAACTCACATAGAGAACTGCCACCTCAATTCCTCGTGTTACTGCGAAATATGCGATCAGACATTCGGCAGTCCGGCTGGCTTACAACTTCATCTATCAAGAGGTCACAACAGATATGGCCAACCGTTCCCCGAATGCGATATATGTGGCCGAATATTCACAAGGAAACAAAATATTAATTCCCACATGATAACAGTGCATCTGCAAGGTGTAGGACCGGAAATTAAATGTAATATGTGCGAAAAAACCTTTACCACTGAAAGAAATCTAAAAAGACATACTAATCAACTTCATAATCCGGACATGGAATACCTTACTTGTGATACATGTAAGAAGTCATTTAAAGGACGCCATAATCTAGTTACTCATATACAGGCAATGCACAATATATCCGATAGAGATCTAATAAAATGTTATCTATGCGACAAAGCGTATACGAACAATAGAAATTTGAAGCGTCATTTTGAAATGTTTCATGGTGAAAGAGGAGAATTCAGATGCGAGATATGTCCTAAAGTGTATACGTCAAATCAAAGTTTACGCAGACATGTTAGAACAAGTCATTATTCTGACGATGCTGAAATGCACAATTGCGAATATTGCGGCAAGTGTATTATCGGGAGGGAAAATCTGGAGTGTCACGTAGCATCCTTTCACAAGCAAGACAATTCAGGAGTCAGCGATGTGGATTCTACAAATAGTTTACAATGCGAGTCTTGTTCAAAGACATTTGAAGAAGAAACTTCGTTGAGACAGCACGTTAAACTAGAGCACTCATTTAAGACATTTTATAACTATTGCAGAAAATCGCTTCTGAAACAGGACAGTTTGAGGGAGGGTAATTACAGCGTGTTTTATAAATGTGAATTTTGTAACGACAGTTTCTGTAATGTATACGAATTAAAAGACCACATGAAAATAAATCACGATAAAGAATACGCGCTATCAACATGCAATGTCTGTTTTGATAAGTTCTACAGTAGAGAAATCATGAGTCAACATAAATTAGTTTGTTTGCCGCCGGCGAATGTCAATTCTTGCAAACACTGTGATAAGTTGTTTACGGATATATCGAGTTTGGAATTCCACACGCGTATCTTTCACCCGCAAGCTCAAATTGCTGATTCTGACGTGACATCTACTTATTTGGACGACTGTTCGGAAAATTACAAATGTCCGCATTGCGATAGAGTATACTATAGTGATAGATCGTTAAAACACCACACTAAACTTAAACATACAACAGACGAGGCCGTCGAATGTGAATACTGCGGGAAAATATGTAATAACAAATACTATTTAGCTTCCCACATCAAAATAGTCCATAGTAACAATTCTTGGTCCAAATGCGATTATTGCGATAAGCAATTCAAATCTAAAAGGAATATTCGGAGGCACATCGAGTATACGCATTTGGGTATGCAAAGATATAAATGCATTGAATGCGAGACACTCTTCAAGGAAAAGAGAAGCTTAAGAAAGCATGTGAGAACTAAACACCCAAACTCAGCGACATTCCCCCAATGCCATTTATGTCATAAACGCTTCGAATCAGCGAAATCGTGTAAAATTCATTTGAAATTAGTACACTCCTTCAACATGAATACGTTTCCTTGCGATCTTTGTTCAGTTTCATTCGGGTCTAAGGCTGCTTTAACCATTCATTTACAAACTAAGCATCTGGCTGAAGACGAAATATACAAATGCGAAGAATGCAACTTAGTCTTTAAAGGCCAAGACAAATTTGAGCATCACAACGATCTTTGCCACGTGAATTTAGTCTCTAATATAAAGCAGAAAGTTTTACCGCGTTGTATTATTTGTATCAAAGACTTTAGTACACGGAAGACTTTGAAACGACACATTAAGAAATTCCATGAAGACTTTGATGTGGAAGAATTGGCTACCTTTGGTTCCAAGCGTCGGAATTTCAATGTGGATTGCGAAGAATGTATTAAGAATTTCTCCGATGATTTCCATTACAATATTTATCTGAAAGTGAGGAATCTCAAAGACTCTGTGATTTTTAAATGTGATATGTGCTGTGCGTCATATAATACTTTGGAATATTCCATTCAACGATATAAGCTATCAAATTATGATTTTAAAGGGAAAATTATTTTGAGTGATCTCTGCACTGCGGAAATGAGTGATGCTGAATCTCCAGGTTTTGGTTCTCTTCAGGAGATTATGGTGCCAGAGAGTACTACTAATGACAATTAA
- Protein Sequence
- MYASMLDYICDYCKRTFTRKYNLQTHIENCHLNSSCYCEICDQTFGSPAGLQLHLSRGHNRYGQPFPECDICGRIFTRKQNINSHMITVHLQGVGPEIKCNMCEKTFTTERNLKRHTNQLHNPDMEYLTCDTCKKSFKGRHNLVTHIQAMHNISDRDLIKCYLCDKAYTNNRNLKRHFEMFHGERGEFRCEICPKVYTSNQSLRRHVRTSHYSDDAEMHNCEYCGKCIIGRENLECHVASFHKQDNSGVSDVDSTNSLQCESCSKTFEEETSLRQHVKLEHSFKTFYNYCRKSLLKQDSLREGNYSVFYKCEFCNDSFCNVYELKDHMKINHDKEYALSTCNVCFDKFYSREIMSQHKLVCLPPANVNSCKHCDKLFTDISSLEFHTRIFHPQAQIADSDVTSTYLDDCSENYKCPHCDRVYYSDRSLKHHTKLKHTTDEAVECEYCGKICNNKYYLASHIKIVHSNNSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSATFPQCHLCHKRFESAKSCKIHLKLVHSFNMNTFPCDLCSVSFGSKAALTIHLQTKHLAEDEIYKCEECNLVFKGQDKFEHHNDLCHVNLVSNIKQKVLPRCIICIKDFSTRKTLKRHIKKFHEDFDVEELATFGSKRRNFNVDCEECIKNFSDDFHYNIYLKVRNLKDSVIFKCDMCCASYNTLEYSIQRYKLSNYDFKGKIILSDLCTAEMSDAESPGFGSLQEIMVPESTTNDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00035013;
- 90% Identity
- -
- 80% Identity
- -