Apsi008113.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acronicta psi
Gene Symbol
-
Assembly
GCA_946251945.1
Location
CAMIUM010000026.1:2739936-2752495[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0022 0.14 12.9 2.6 3 23 243 263 241 263 0.97
2 11 0.16 9.8 7.1 9.4 1 23 269 291 269 291 0.95
3 11 3.8e-05 0.0023 18.5 5.6 1 23 297 319 297 319 0.98
4 11 0.00042 0.026 15.2 1.5 1 23 325 347 325 347 0.97
5 11 8.7e-06 0.00054 20.5 0.9 1 23 353 375 353 375 0.97
6 11 1.9e-06 0.00012 22.5 0.1 1 23 381 403 381 403 0.98
7 11 0.00014 0.0084 16.7 0.5 1 23 408 430 408 430 0.96
8 11 0.65 40 5.1 3.6 3 19 438 454 437 460 0.90
9 11 3.3e-05 0.0021 18.6 0.4 1 23 554 576 554 576 0.97
10 11 8.7e-05 0.0054 17.3 1.4 1 23 646 668 646 668 0.96
11 11 3.6e-05 0.0022 18.5 4.3 1 23 678 700 678 700 0.97

Sequence Information

Coding Sequence
ATGTGTATGCCAACTCCTAACAATGTTTCGGGCTTCGGTTACTCGTGGGGCTTCACGAGTTCAGCGGATCTTACGAAGGGCGAAGTGGAAACACCGAGTAGTCTGAGCTATACTTTAGGAAATACGGTTTCTCCTGAAACAACATTGACTGTTATGTCCCATAAGACACCGCAAGTGCAAGAAAAAGTTGGTGCAGTTACCGTTGCTGTGTCAAATGCAGGTGCACAGCTCACTAGGGTTGTGAGTGGTGGTACACCGGTTTCAGGCAGACGGACAATGTTCGTAGTTAATGATGCCCCAGCTCACACCTTGAACAGAGTGTCACACCAGAACCAGACAGCTACTATACATACCAACTTAGCAGCTAAGCCGTTTATGACACCGATAGGTCCCATCCAGTTGACTGCGGAGGAATGCAACGAGATCTTGATGAAGCGCGCGCTCCAAGCGCAGGGCATCGCGACACCAGTGATTGACGCGTCCCAGCTCAACCATACGTTGTTGAACGGAGGTCTGAAGAGCCTGGCTGAGGCGACGGTGCAGCAATCGCAGGCGGAAACCATTCAGACCACGACTGTACACCAGCATCACTTGTTACATGCGAAACAGGAACCTGGAACTGCTAACAACTCGCCTAAAACGGTATATTCCCAGACGGAGCTGATGAACTCTAACTCGGTGATGTCGACGGCGCCGCCTGTCGTGGTCAAGGAGCGTCCGTACGGGTGTGACGAGTGCGGGAAGTCCTTCCTGCTCAAACACCACCTCACTACCCACGCAAGAGTCCATACCGGTGAGCGTCCGCACGCGTGCGTTCACTGCGCCAAGACATTCGCGCACAAGCATTGCCTCAACACACACCTCTTACTGCACAGTTCTAACCGCCCGTACCGCTGCCCCGAATGCAAGAAATCCTTCACGCTCAAACATCACCTTCTCACACACTCGCGGGTACACAGTCGGGAGCGTCCGTTTGTGTGCAACGAGTGTGGGCGTGGATTTCCTCTGAAGCGCCACCTGGTGACGCACAGCAAGTACCACGCAGGCGAGCGGCCCTATGTGTGTAGCGACTGTGGAGAGAGTTTCGCACAAAAGGAGCACCTGGTGATGCACAGCCGGTTCCACGGGTCGCTGTCGCCGTACGTGTGCCCGGACTGCGGCGTGACGTTCGCGCGCAAGTTCCAGCTCGTGAACCACGGCCGCGTGCACGGCCGCGTGCCGCACGCCTGCCCCGTCTGCGGCAAGGAGTTCCTGCAGAAGAGGACGCTCGTCGCCCACATGAAATTACACACAGGAGAAGGTGCAGTTGCATGTCTAGAATGTGGTGAAGCCTTCAAATGCAAGTcagagttgcagcaacactgcaaaatgacgcggcactgtctcagcacgacgcaatcgcaacaacaacaacagcagcagcagcaacaacagcaacagcagcaacaacaacagcagcaacagcaacaagcgcaacaacaagcacaacagcaggcccagcagcaagcacagcagcaggcgcagcaacaacaacaacagcaacagcagcaacaacaacaacaacaagcaacTGTGATAAAACAGGATGATTTTAAACCGCAAATTGTACAAGTTATCGGAGCTGATGGTCAAATATTATCAGAAAAGGCGACGCCAGGGTATGCGTGTCCCGAGTGTGGATCATGTTTCAACACGAAGGAGGCGCTGTCGCTGCACGTGCGGCTGCACGCGGGCGACCGCACGTGCGTGACGGACCTGTGCGCGCTGACGGCGGCGCTGCAGCCCGGACTCGTCGCCGCCGCGCACCAGGCGCAGCAGCACAGTTTCATTGTTCCAGATCAGCCTATACAGATAATTTCGTCCAACCCCAACAATGTTGTACATACGCAAGTCATAGCTACGAATCACCACGTAACGCCGCCCAGACCGAAAATTCACTTTTGTGGCGATTGCGGGAAAGGGTTCGCGGCTAAACACGGACTATTAGCGCATCAAAGGAGACACCCGGACGGCAGTTGCACTCTTCGCACGCATGTGTGTGACCAGTGCGGGAAGGCGTTCTTCCAGAAGAACCACCTCATGCTGCACCAGCGGCAACACATGGACCTGCCGCCCAGAAATAGTCAGCCCGTAACGCAAGTAACGCAACAAGCGGTGAACCAGGCGGCGGAGCAGGCCGCACAACAAgcgcaacaggtgcaacaacaagtgcagcaggtgcagcagcaagtgcaacagcaagtgcagcaacagcaacaacaacagcaacaccagcaacaagtgcaacaccagaacagcCTGGAGATGGATCAGCAAGACCATCAGCAGGCCACACATATACAAGTTGTAACAAACAGATCGGGGCAGGTGATAGGCAACCAGATAGTGGTGGGCGTGGGCGGCACGCGGCGGCTGCTGGCGCCCGCGCTGCACATCGTGGGGCGCGACGTCAAGCCCAGCCTCGCGCACCTCGCGCACAAGCACCACGCCAGGCACCACACCACCAGCGGCGACGCAAAAGAAGTCGGCGGTCTAGTGTTATCGACGGGGCGGACGGGCCTCATCAAGTACGAGATCTCCCTCCCGCCCCCCACGTCTGTAGTGCAAGTGCAACAGCTGGACTGA
Protein Sequence
MCMPTPNNVSGFGYSWGFTSSADLTKGEVETPSSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGAVTVAVSNAGAQLTRVVSGGTPVSGRRTMFVVNDAPAHTLNRVSHQNQTATIHTNLAAKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGGLKSLAEATVQQSQAETIQTTTVHQHHLLHAKQEPGTANNSPKTVYSQTELMNSNSVMSTAPPVVVKERPYGCDECGKSFLLKHHLTTHARVHTGERPHACVHCAKTFAHKHCLNTHLLLHSSNRPYRCPECKKSFTLKHHLLTHSRVHSRERPFVCNECGRGFPLKRHLVTHSKYHAGERPYVCSDCGESFAQKEHLVMHSRFHGSLSPYVCPDCGVTFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKLHTGEGAVACLECGEAFKCKSELQQHCKMTRHCLSTTQSQQQQQQQQQQQQQQQQQQQQQQQAQQQAQQQAQQQAQQQAQQQQQQQQQQQQQQQATVIKQDDFKPQIVQVIGADGQILSEKATPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAAHQAQQHSFIVPDQPIQIISSNPNNVVHTQVIATNHHVTPPRPKIHFCGDCGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRNSQPVTQVTQQAVNQAAEQAAQQAQQVQQQVQQVQQQVQQQVQQQQQQQQHQQQVQHQNSLEMDQQDHQQATHIQVVTNRSGQVIGNQIVVGVGGTRRLLAPALHIVGRDVKPSLAHLAHKHHARHHTTSGDAKEVGGLVLSTGRTGLIKYEISLPPPTSVVQVQQLD