Hass017482.1
Basic Information
- Insect
- Helicoverpa assulta
- Gene Symbol
- -
- Assembly
- GCA_029618815.1
- Location
- CAWLCW010000018.1:12645620-12668914[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0024 0.21 12.9 2.6 3 23 244 264 242 264 0.97 2 11 0.0018 0.16 13.3 7.2 1 23 270 292 270 292 0.97 3 11 4.1e-05 0.0036 18.5 5.4 1 23 298 320 298 320 0.98 4 11 0.00046 0.04 15.2 1.5 1 23 326 348 326 348 0.97 5 11 9.5e-06 0.00084 20.5 0.9 1 23 354 376 354 376 0.97 6 11 7.1e-06 0.00063 20.9 0.1 1 23 382 404 382 404 0.98 7 11 0.00012 0.01 17.1 0.7 1 23 409 431 409 431 0.96 8 11 0.63 55 5.3 3.3 3 19 439 455 438 461 0.92 9 11 3.6e-05 0.0032 18.7 0.4 1 23 555 577 555 577 0.97 10 11 9.4e-05 0.0083 17.4 1.4 1 23 645 667 645 667 0.96 11 11 3.9e-05 0.0034 18.6 4.3 1 23 677 699 677 699 0.97
Sequence Information
- Coding Sequence
- aTGTGTATGCCAACTCCTAATAATGTTTCGGGCTTCGGAGGCTACTCGTGGGGATTCACGAGTTCGGCAGATCTCACGAAGGGCGAAGTGGAAACACCGAGTAGCTTGAGTTATACATTGGGGAATACGGTGTCCCCAGAAACAACACTGACTGTTATGTCCCACAAAACACCGCAGGTCCAAGAAAAAGTAGGCGCAGTCACGGTAGCAGTATCTAATGCAGGGGCACAACTAACAAGGGTTGTGACTACGGGCACACCGGTGTCAGGAAGACGGGCTATGTTCGTAGTGAACGATGCTGCGGCACATACGTTGAATAGAGTTTCACAGCAAAACCAGACTACTACTATACATACGAACTTAGCAGCTAAGCCGTTTATGACACCAATAGGTCCAATCCAGTTGACTGCCGAAGAATGCAACGAAATATTGATGAAGAGGGCGTTACAAGCTCAGGGGATTGCCACGCCAGTCATAGATGCTTCGCAACTCAACCACACGTTGTTAAACGGAGGGTTGAAGAGTCTGGCTGAAGCGACGGCACAGCAAACCCAAGCGGAGACCATCCAGACTACGACTGTTCATCAGCACCATTTGTTGCATACCAAACAGGAGCCGGGGACGGCGAATAATTCGCCTAAAACGGTGTATTCGCAGACGGAGCTCATGAACACCAACTCGGTGATGACCACAGCGCCCCCTGCCGCGGTGAAGGAGCGACCTTACGGCTGCGACGAGTGCGGCAAATCCTTCCTACTGAAGCACCATCTTACTACCCACGCTAGAGTACATACAGGCTCGCGGCCCTACGCCTGCCCCCACTGCGCCAAGACATTCGCGCACAAGCATTGCCTCAACACCCATCTCTTACTGCACACTACTAACCGCCCGTACCGCTGCCCCGAATGCAAGAAATCCTTCACGCTCAAACACCACCTACTCTCACATTCACGGGTGCACAGTCGGGAACGTCCGTTCGTGTGCAACGAGTGCGGGCGCGGGTTCCCGCTGAAGCGGCACCTCGTCACGCACAGCAAGTACCACGCCGGCGAGCGGCCCTACGTCTGCAGCGACTGCGGGGAGAGCTTCGCGCAGAAGGAGCACCTAGTAATGCACAGCCGCTTCCACGGTTCCCTCTCCCCGTACGTGTGCGGCGACTGCGGGCTGACGTTCGCGCGCAAGTTCCAGCTCGTCAACCACGGCCGCGTGCACGGCCGCGTGCCCCACGCCTGCCCCGTCTGCGGCAAGGAGTTCCTGCAGAAGCGGACCCTCGTCACGCACATGAAAATCCACACGGGAGAAGGAGCAGTAGCATGCTTAGAATGCGGCGAGGCCTTCAAATGCAAATCAGAGTTACAACAACACTGCAAAATAACTCGGCACTGTCTCACCACAAGCCAATCGCAACAGCAAcagcagcaacaacaacaacagcaacAACAACAGCAGCAACAGCAACAGCAAGCGCAGCAACAGGCCCAACAACAGGCGCAGCAACAAGCGCAACAGCAAGCGCAGCAACAAGcccaacaacaacaacagcagcAGCAACAGCAGCAACAACAGCAACAAGCAACTGTGATAAAACAAGATGACTTTAAACCGCAAATTGTACAGgtGATAGGCGCAGACGGACAAATAGTTTCGGAGAAGTCGCCCGGCTACGCGTGTCCTGAGTGCGGATCTTGTTTCAATACTAAGGAGGCGTTATCCCTACACGTCCGCCTGCACGCGGGGGACCGCACGTGCGTGACGGACCTGTGTGCCCTGACGGCCGCCCTGCAGCCCGGCCTTGTCGCCGCACATCAACAACACAGTTTCATAGTTCCAGACCAACCTATTCAGATAATATCGTCGAACCCCAACAATGTAGTGCATACGCAAGTCATAGCTGCGCAGAATCATCAAATAACGGCTCCCAGACCGAAGATCCACTTTTGTGGAGACTGCGGGAAGGGATTCGCAGCTAAACATGGCTTGTTAGCACATCAAAGGAGACACCCGGACGGCAGCTGCACGCTGCGGACACACGTGTGCGACCAGTGCGGGAAGGCCTTCTTCCAGAAGAACCACCTCATGCTGCACCAGCGCCAGCACATGGACCTGCCGCCTAGAAATAGTCAACCAGTAAACACATCGCAACAAGCGGCGCAACAAGCCGCCCAACAAGCCGCGCAACAAGCGCAACAAGTACAGCAACAGGTGCAACAGCAGGTGCAACAACAGCAACAGCACCAGCAGCAGGTGCAACACCAGAACAGTCTCGAAATGGACCAGCAGGACCATCAGCAGGCCACGCATATACAAgttGTAACAAACAGATCAGGGCAGGTGATCGGCAATCAGATAGTGGTGGGAGGGCTCGGCACGCGGCGGCTGGTGACGCCGCTGCAGCTGCTCGGCAGAGACGTCAAGCCACTCGCGCATCTCACGCACAAGCACAACCAGAGGCAGCATACTACAAGTGGTGACGCGAAAGAAGTAGGAGGTCTCGTGTTATCAGCGGGTCGGACAGGCCTCATCAAGTACGAGATCTCCCTCCCGCCCCCCACGTCTGTGGTGCAAGTGCAACAATTGGATTGA
- Protein Sequence
- MCMPTPNNVSGFGGYSWGFTSSADLTKGEVETPSSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGAVTVAVSNAGAQLTRVVTTGTPVSGRRAMFVVNDAAAHTLNRVSQQNQTTTIHTNLAAKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGGLKSLAEATAQQTQAETIQTTTVHQHHLLHTKQEPGTANNSPKTVYSQTELMNTNSVMTTAPPAAVKERPYGCDECGKSFLLKHHLTTHARVHTGSRPYACPHCAKTFAHKHCLNTHLLLHTTNRPYRCPECKKSFTLKHHLLSHSRVHSRERPFVCNECGRGFPLKRHLVTHSKYHAGERPYVCSDCGESFAQKEHLVMHSRFHGSLSPYVCGDCGLTFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVTHMKIHTGEGAVACLECGEAFKCKSELQQHCKITRHCLTTSQSQQQQQQQQQQQQQQQQQQQQAQQQAQQQAQQQAQQQAQQQAQQQQQQQQQQQQQQQATVIKQDDFKPQIVQVIGADGQIVSEKSPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAHQQHSFIVPDQPIQIISSNPNNVVHTQVIAAQNHQITAPRPKIHFCGDCGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRNSQPVNTSQQAAQQAAQQAAQQAQQVQQQVQQQVQQQQQHQQQVQHQNSLEMDQQDHQQATHIQVVTNRSGQVIGNQIVVGGLGTRRLVTPLQLLGRDVKPLAHLTHKHNQRQHTTSGDAKEVGGLVLSAGRTGLIKYEISLPPPTSVVQVQQLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00018396;
- 90% Identity
- iTF_01062106;
- 80% Identity
- -