Tmat015417.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thalpophila matura
Gene Symbol
-
Assembly
GCA_948465475.1
Location
OX419189.1:3772399-3797202[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0021 0.15 12.9 2.6 3 23 243 263 241 263 0.97
2 11 0.16 11 7.1 9.4 1 23 269 291 269 291 0.95
3 11 3.7e-05 0.0025 18.5 5.6 1 23 297 319 297 319 0.98
4 11 0.00041 0.028 15.2 1.5 1 23 325 347 325 347 0.97
5 11 8.6e-06 0.00059 20.5 0.9 1 23 353 375 353 375 0.97
6 11 1.9e-06 0.00013 22.6 0.1 1 23 381 403 381 403 0.98
7 11 6.7e-05 0.0046 17.7 0.4 1 23 408 430 408 430 0.96
8 11 0.57 39 5.3 3.3 3 19 438 454 437 460 0.92
9 11 3.3e-05 0.0023 18.7 0.4 1 23 557 579 557 579 0.97
10 11 8.5e-05 0.0059 17.3 1.4 1 23 647 669 647 669 0.96
11 11 3.5e-05 0.0024 18.6 4.3 1 23 679 701 679 701 0.97

Sequence Information

Coding Sequence
ATGTGTATGCCAACTCCTAACAATGTTTCGGGCTTCGGATACTCGTGGGGCTTCACGAGTTCCGCGGACCTCACGAAGGGCGAAGTGGAAACGCCGAGTAGTTTGAGCTATACCTTGGGAAATACGGTTTCCCCAGAGACAACACTGACTGTTATGTCCCACAAGACACCGCAAGTCCAAGAAAAAGTGGGTGCAGTCACTGTAGCCGTATCAAATGCAGGTGCTCAACTTACTAGGGTTGTGACTACAGGCACGCCTGTCTCAGGGAGACGGGCTATGTTTGTAGTGAACGATGCCGGAGCTCATACTCTGAATAGGGTGACCCAGCAGAATCAGACCGCTACTATACATACGAACTTAGCAGCTAAGCCGTTTATGACACCGATAGGTCCCATCCAGTTGACTGCCGAAGAATGCAACGAGATTTTGATGAAGAGGGCACTTCAAGCTCAAGGCATCGCGACCCCAGTGATAGACGCGTCCCAACTCAACCACACGATATTAAATGGGGGGCTCAAGAGCCTAGCAGAGGCGACGGTACAGCAGACGCAGGCGGAAACCATTCAGACCACGACTGTACATCAGCATCACTTATTGCACACGAAACAGGAGCCTGGAACAACTAATAACTCGCCTAAAACGGTGTATTCCCAGACGGAGCTGATGAACACCAACTCGGTGATGACGTCGGCGCCCCCCGCCGTGGTGAAGGAGCGCCCCTACGGGTGCGACGAGTGCGGCAAGTCCTTCCTGCTCAAACACCACCTCACCACTCACGCGAGAGTGCATACCGGTGAGCGTCCGCACGCGTGCGTTCACTGCGCCAAGACATTCGCGCACAAGCATTGCCTGAACACACACCTCTTACTGCACAGTTCTAACCGACCGTACCGCTGCCCCGAATGCAAGAAATCCTTCACGCTCAAACACCACCTTCTCACACACTCACGGGTGCACAGTCGAGAGCGTCCGTTTGTGTGCAACGAGTGCGGCCGCGGGTTCCCGCTGAAGCGCCACCTGGTGACGCACAGCAAGTACCACGCGGGCGAGCGGCCGTACGTCTGCAGCGACTGTGGCGAGAGCTTCGCGCAAAAGGAGCACCTGGTGATGCACAGCCGCTTCCACGGCTCGCTGTCGCCGTACGTGTGCCCCGACTGCGGCGTGACGTTCGCGCGGAAGTTCCAGCTCGTGAACCACGGGCGCGTGCACGGCCGCGTGCCGCACGCCTGCCCCGTCTGCGGCAAGGAGTTCCTGCAGAAGAGGACGCTCGTCGCGCACATGAAAATCCATACGGGAGAGGGCGCAGTCGCGTGCCTAGAATGCGGCGAAGCCTTCAAATGCAAGTCAGAGTTGCAGCAACACTGCAAAATCACGCGGCACTGTCTCACATCGTCCCAAACGCAACAGCAACAACAGCAACAGCAACAACAGCAGCAACAACAGCAGCAGCAACAACAGCAACAACAACAGCAGCAGCAGCAACAAGCTCAACAACAAGCACAGCAACAAGCACAACAACAAGCGCAGCAACAACAGCAACAACAACAGCAGCAGCAACAACAACAGCAGCAAGCAACTGTGATAAAACAAGACGATTTTAAACCGCAAATTGTACAGGTGATAGGCGCAGACGGTCAAATAGTCTCGGAGAAGGGGACGGGGCCGGGCTACGCGTGTCCAGAGTGCGGCTCCTGTTTCAACACGAAGGAGGCGCTGTCGCTGCACGTGCGGCTGCACGCGGGCGACCGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCGGCGCTGCAGCCCGGCCTCGTCGCCGCGCACCACGCGCACCACAGTTATATTGTTCCAGATCAGCCCATACAGATAATTACTTCGAACCCGAACAACGTTGTGCACACGCAGGTCATAGCTTCGAATCACCAAATAACGGCTCCCAGACCGAAGGTTCACTTTTGTGGCGATTGCGGAAAAGGGTTCGCGGCTAAACATGGCCTGTTAGCGCATCAGAGAAGGCACCCGGACGGCAGCTGCACGCTACGCACGCACGTGTGCGACCAGTGCGGCAAGGCGTTCTTCCAGAAGAACCACCTCATGCTGCACCAGAGACAACACATGGACCTGCCGCCCAGGAGTAGTCAAGTGCAACCCGTAACGCAACAAGCGGCGCAACAGGCAGCGCAACAGGCGGCGCAACAAGCGCAGCAGGTGCAACAACAGGTGCAACAACAAGTGCAACAACAGCAACAGCAACAGCAACAACACCAGCAACAGGTGCAACATCAGAACAGCTTGGAGTTGGAACAGGACCACCAGCAGGCCACGCATATACAAGTTGTAACGAACAGGTCGGGGCAGGTGATCGGCAACCAGATCGTGGTGGGGTCGCTGGGCGCGCGGCGGCTGGTGGCCCCGCTGCACCTGCTGGGCCGCGACGTCAAGCCCTCGCTCGCGCACCTCACGCACAAGCACCACGCGAGGCAGCACACCACCAGCGGCGACGTGAAAGAAGTCGGCGGCCTAGTCTTATCCGCGGGTCGGACGGGCCTCATCAAGTACGAGATCTCCCTCCCTCCCCCCACATCCGTAGTGCAAGTGCAGCAGCTGGACTGA
Protein Sequence
MCMPTPNNVSGFGYSWGFTSSADLTKGEVETPSSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGAVTVAVSNAGAQLTRVVTTGTPVSGRRAMFVVNDAGAHTLNRVTQQNQTATIHTNLAAKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTILNGGLKSLAEATVQQTQAETIQTTTVHQHHLLHTKQEPGTTNNSPKTVYSQTELMNTNSVMTSAPPAVVKERPYGCDECGKSFLLKHHLTTHARVHTGERPHACVHCAKTFAHKHCLNTHLLLHSSNRPYRCPECKKSFTLKHHLLTHSRVHSRERPFVCNECGRGFPLKRHLVTHSKYHAGERPYVCSDCGESFAQKEHLVMHSRFHGSLSPYVCPDCGVTFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGAVACLECGEAFKCKSELQQHCKITRHCLTSSQTQQQQQQQQQQQQQQQQQQQQQQQQQQQQAQQQAQQQAQQQAQQQQQQQQQQQQQQQQATVIKQDDFKPQIVQVIGADGQIVSEKGTGPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAHHAHHSYIVPDQPIQIITSNPNNVVHTQVIASNHQITAPRPKVHFCGDCGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRSSQVQPVTQQAAQQAAQQAAQQAQQVQQQVQQQVQQQQQQQQQHQQQVQHQNSLELEQDHQQATHIQVVTNRSGQVIGNQIVVGSLGARRLVAPLHLLGRDVKPSLAHLTHKHHARQHTTSGDVKEVGGLVLSAGRTGLIKYEISLPPPTSVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00018396;
90% Identity
iTF_01062106;
80% Identity
-