Basic Information

Insect: Acromyrmex charruanus
Gene Symbol: -
Assembly: GCA_017607545.1
Location: JAANIC010000508.1:657960-660164[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3 1.5e+02 2.2 0.3 1 8 3 10 3 12 0.91

2 14 0.54 28 4.5 0.2 2 23 273 294 272 294 0.94

3 14 0.0015 0.078 12.5 1.4 1 23 302 325 302 325 0.95

4 14 0.00024 0.012 15.0 1.1 1 22 331 352 331 352 0.94

5 14 0.64 33 4.2 7.0 1 23 414 436 414 436 0.95

6 14 0.0012 0.063 12.8 0.4 1 23 443 466 443 466 0.92

7 14 5.1e-05 0.0027 17.2 2.1 1 23 472 494 472 494 0.97

8 14 0.086 4.5 7.0 5.6 1 23 500 522 500 522 0.97

9 14 0.00059 0.03 13.8 1.1 1 23 527 549 527 549 0.96

10 14 0.036 1.9 8.2 0.1 1 23 562 585 562 585 0.94

11 14 9.3e-05 0.0048 16.3 3.2 1 23 601 624 601 624 0.96

12 14 0.00061 0.032 13.8 0.7 1 23 633 656 633 656 0.97

13 14 0.0002 0.011 15.3 2.2 2 23 660 681 659 681 0.96

14 14 0.00025 0.013 15.0 1.0 1 23 709 732 709 732 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3	1.5e+02	2.2	0.3	1	8	3	10	3	12	0.91
2	14	0.54	28	4.5	0.2	2	23	273	294	272	294	0.94
3	14	0.0015	0.078	12.5	1.4	1	23	302	325	302	325	0.95
4	14	0.00024	0.012	15.0	1.1	1	22	331	352	331	352	0.94
5	14	0.64	33	4.2	7.0	1	23	414	436	414	436	0.95
6	14	0.0012	0.063	12.8	0.4	1	23	443	466	443	466	0.92
7	14	5.1e-05	0.0027	17.2	2.1	1	23	472	494	472	494	0.97
8	14	0.086	4.5	7.0	5.6	1	23	500	522	500	522	0.97
9	14	0.00059	0.03	13.8	1.1	1	23	527	549	527	549	0.96
10	14	0.036	1.9	8.2	0.1	1	23	562	585	562	585	0.94
11	14	9.3e-05	0.0048	16.3	3.2	1	23	601	624	601	624	0.96
12	14	0.00061	0.032	13.8	0.7	1	23	633	656	633	656	0.97
13	14	0.0002	0.011	15.3	2.2	2	23	660	681	659	681	0.96
14	14	0.00025	0.013	15.0	1.0	1	23	709	732	709	732	0.98

Sequence Information

Coding Sequence: ATGATATATCCCTGTCCGAATtgcaataaagatttaataatcttaataaacaACAATCCTTCAGATAGTAGTCATACATTTCATGCTTCATTGGCTCTTGTAAATCACATAGAACAATCGCAAGAGAATAATCAAATATCTGATAATGCAGAAGAGTTTAACGTTTGTACATTGAAATCAAGAGCacaagataaattatatgaattatcattgtatcaaaatattatcaatgaaaatacaacaaatgataataaatgcgATATCGAAAGGAAACATGGTAGCTTGCAAAAAATTGATGTATCATGTAAACTGAAAGCGGGTATAAAGAGAAAGATTCATCAAAGTACTTCTACAAAAACATTCATTAATCCTACTAAGATGCAGAAATTAGAAGCAAAATTAGATACAATGGAACGAAGTTTTAATGAATTAGACAGTGATTacagtaaattaaatgtaactgACTTAATAACATTTCAATCAGTAAACAATGATGTAGAATGTTttgatgaagaaataaaaaatgaacaggAATCTAGTACAAGggatatgataaaaaagaaatatcttgGTAAATCGCGAATAATTCgagtaaaattaaatgcaaaagaACAAGATGAATCAAATAGTAATTATGATAAGTCAAATGTAACTGATTTGATAACACTCCAGTCAGAAAACGATAATATTGAATACATCACTGATGATAAAGAAATTGAAGATGACAACATAATGGTCGTGACCAAAATGGAAGAAGAATATGTCAATGAAAATGATACAAATGAcatcaatatttcaaaaaataatgtaaaacaagAATGCAATTTATGTGGAGCtcgttatattttacaagaaaaatatgaatttcacATGGAGAgacacaaattaaataaaatagataaatacgTTTGTACAAAATGCGATAAAGAaactaaaaatgaaaacttGTTGTGGGATCACTACCTTCACATGCACAAAAGCTCAATACAGTATCTTtgtttgaaatgtaaaaaagtattCATGAAAAAGGCACATTTAATTGCGCATCAGAAAACGTGCAAATTCTCTGATAACGAAACAatgctaaatattaaaacagatGTGGATAacaatcagaaaattattacaagACCGAGGCGAAAATGCAAAGTCTGCAGAAAATTGATCAGAGATCCTAATGCTATTAACGATGAAGCAATGTGCGCCTCCTGTAAAATAAGAGGAATTTCCCAGCGACAATATTACTGTGCAAAGTGCCATAAACATTTTATGCGTCAGGAGAGACTCGAGTTCCACAAGATGCGACATAATGAGAATATGGACGAGTTTATCTGCAGCACGTGCGGTAAGGAATTCAGTGGGGAAAATTCTTTATACGAACATTATCTCTTTGTGCATAAGGGATTTAGACCACATATTTGTGAAATATGTGGCAAGTCATTTCAGCTGAAGGTGCGATTGAAGGAACATCAGCGAAAACATACTGGTGAGATGCCTTATCAATGTGAAGTATGTGGCCTGCGATGTAGGACTACACatgcattaaaatttcacaAGAAGTCTCATGTCTCTAATCGCCACATTTGCGAGATATGTGGCAAATCGTTCcttaaaaaacagaattggAATGAACATCTGGAGAGACACTGGAAAAAGGATAAGAATGTATCACTTCCACGAATATTTACATGTCCTTTGTGCAACGATAATTTGCCGACCTACCGTATGTTAAAGAATCACATGATTGGAATTCATGAGCTTGACCGTCAAGACCCCCTAATAATGAATCAAAAACCATTGTACGAATGCAATGAGTGTCAAGAGAAATTCAAGCATCAAATGTCGCTCAAATCACACAAGGAAAAGGTACATGAAGGCAAAATTGTACCTCTTGCCTTTCAGTGTgatatatgcaaaaatgtatacaaagCCAAACGATTCCTAATAAGGCATATTCAGAGTGAACacaatgataataaatgtCAGCAGTGTGATGAAACATTCACAGATAAAAAAGATCTTGATCATCACGTTTCATTACACAATAGTAAGATCGCATGCGAGTACTCTGACAAACAAAGGGATGCTAGGAATTTACATCACCAAGAACATACGATCATTTTTTACCAGTGTGGAGATTGCAACGAGTCATTCGATAGCTATGCTAATCGCTTAAATCATCGCAAAAAGATGCACAAACCCGAA
Protein Sequence: MIYPCPNCNKDLIILINNNPSDSSHTFHASLALVNHIEQSQENNQISDNAEEFNVCTLKSRAQDKLYELSLYQNIINENTTNDNKCDIERKHGSLQKIDVSCKLKAGIKRKIHQSTSTKTFINPTKMQKLEAKLDTMERSFNELDSDYSKLNVTDLITFQSVNNDVECFDEEIKNEQESSTRDMIKKKYLGKSRIIRVKLNAKEQDESNSNYDKSNVTDLITLQSENDNIEYITDDKEIEDDNIMVVTKMEEEYVNENDTNDINISKNNVKQECNLCGARYILQEKYEFHMERHKLNKIDKYVCTKCDKETKNENLLWDHYLHMHKSSIQYLCLKCKKVFMKKAHLIAHQKTCKFSDNETMLNIKTDVDNNQKIITRPRRKCKVCRKLIRDPNAINDEAMCASCKIRGISQRQYYCAKCHKHFMRQERLEFHKMRHNENMDEFICSTCGKEFSGENSLYEHYLFVHKGFRPHICEICGKSFQLKVRLKEHQRKHTGEMPYQCEVCGLRCRTTHALKFHKKSHVSNRHICEICGKSFLKKQNWNEHLERHWKKDKNVSLPRIFTCPLCNDNLPTYRMLKNHMIGIHELDRQDPLIMNQKPLYECNECQEKFKHQMSLKSHKEKVHEGKIVPLAFQCDICKNVYKAKRFLIRHIQSEHNDNKCQQCDETFTDKKDLDHHVSLHNSKIACEYSDKQRDARNLHHQEHTIIFYQCGDCNESFDSYANRLNHRKKMHKPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00182202;
90% Identity: iTF_00016259; iTF_01476497; iTF_00182839; iTF_00016904; iTF_01262032; iTF_01477128; iTF_00182202;
80% Identity: -