Ahey007605.1
Basic Information
- Insect
- Acromyrmex heyeri
- Gene Symbol
- -
- Assembly
- GCA_017607565.1
- Location
- JAANIB010009355.1:974453-977076[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.6 1.8e+02 2.0 0.3 1 8 107 114 107 116 0.91 2 14 0.67 33 4.3 0.2 2 23 377 398 376 398 0.94 3 14 0.0019 0.092 12.3 1.4 1 23 406 429 406 429 0.95 4 14 0.0003 0.015 14.8 1.1 1 22 435 456 435 456 0.94 5 14 0.8 39 4.0 7.0 1 23 518 540 518 540 0.95 6 14 0.0015 0.074 12.6 0.4 1 23 547 570 547 570 0.92 7 14 6.3e-05 0.0031 16.9 2.1 1 23 576 598 576 598 0.97 8 14 0.11 5.3 6.8 5.6 1 23 604 626 604 626 0.97 9 14 0.00072 0.036 13.6 1.1 1 23 631 653 631 653 0.96 10 14 0.045 2.2 8.0 0.1 1 23 666 689 666 689 0.94 11 14 0.00011 0.0057 16.1 3.2 1 23 705 728 705 728 0.96 12 14 0.00075 0.037 13.6 0.7 1 23 737 760 737 760 0.97 13 14 0.00025 0.013 15.0 2.2 2 23 764 785 763 785 0.96 14 14 0.00031 0.015 14.8 1.0 1 23 813 836 813 836 0.98
Sequence Information
- Coding Sequence
- atgtcTAAAATGGAATGTGATATATGCCGTCTATGTGgtattaaatttgagtttgaacatttgaaatatatctttGATGAAGTAACTAATTTGGCACAGATAATAAATGAGACTTTACCAATTAAGatttcacAAGATGatcatttcaaatatatatgtttagactgttatgataaagttatcagtcattataattttattcaaaatatattagtatacTCGAAGGAATGTGAGACAAGAACTGTCTCTTTCTTTGAAgtcaataaaaatgagaaattggAAGATGTGGTGATTTCTAAGTTACACAGTGACATGATATATCCCTGTCCGAATtgcaataaagatttaataatcttaataaacaACAATCCTTCAGATAGTAGTCATACATTTCATGCTTCATTGGCTCTTGTAAATCACATAGAACAATCGCAAGAGAATAATCAAATATCTGATAATGCAGAAGAGTTTAACGTTTGTACATTGAAATCAAGAGCacaagataaattatatgaattatcattgtatcaaaatattatcaatgaaaatacaacaaatgataataaatgcgATATCGAAAGGAAACATGGTAGCTTGCAAAAAATTGATGTATCATGTAAACTGAAAGCAGGTATAAAGAGAAAGATTCATCAAAGTACTTCTACGAAAACATTCATTAATCCTACTAAGATGCAGAAATTAGAAGCAAAATTAGATACAATGGAACGAAGTTTTAATGAATTAGACAGTGATTacagtaaattaaatgtaactgACTTAATAACATTTCAATCAGTAAACAATGATGTAGAATGTTTTggtgaagaaataaaaaatgaacaggAATCTAGTACAAGggatatgataaaaaagaaatatcttggTAAATCGCGAATAATTcgagtaaaattaaatgcaaaagaaCAAGATGAATCAAATAGTAATTATGATAAGTCAAATGTAACTGATTTGATAACACTCCAGTCAGAAAACGATAATATTGAATACATCACTGATGATAAAGAAACTGAAGATGACAATATAATGGTCGTGGCCAAAATGGAAGAAGAATATGTCAATgaaaatgatacaaatgacatcaatatttcaaaaaataatgtaaaacaagAATGCAATTTATGTGGAGCtcgttatattttacaagaaaaatatgaatttcacATGGAGAgacacaaattaaataaaatagataaatacgTTTGTACAAAATGCGATAAAGAaactaaaaatgaaaacttGTTGTGGGATCACTACCTTCACATGCACAAAAGCTCAATACAGTATCTTtgtttgaaatgtaaaaaagtattCATGAAAAAGGCACATTTAATTGCGCATCAGAAAACGTGTAAATTCTCTGATAACGAAACAatgctaaatattaaaacagatGTGGATAacaatcagaaaattattacaagACCGAGGCGAAAATGCAAAGTCTGCAGAAAATTGATCAGAGATCCTAATGCTATTAACGATGAAGCAATGTGCGCCTCCTGTAAAATAAGAGGAATTTCCCAGAGACAATATTACTGTGCAAAGTGCCATAAACATTTTATGCGTCAGGAGAGACTCGAGTTCCACAAGATGCGACATAATGAGAATATGGACGAGTTTATCTGCAGCACGTGCGGTAAGGAATTCAGTGGGGAAAATTCTTTATACGAACATTATCTCTTTGTGCATAAGGGATTTAGACCACATATTTGTGAAATATGTGGCAAGTCATTTCAGCTGAAGGTGCGATTGAAGGAACATCAGCGAAAACATACTGGTGAGATGCCTTATCAATGTGAAGTATGTGGCCTGCGATGTAGGACTACAcatgcattaaaatttcacaAGAAGTCTCATGTCTCTAATCGCCACATTTGCGAGATATGTGGCAAATCGTTCCTTAAAAAACAGAATTGGAATGAACATCTGGAGAGACACTGGAAAAAGGATAAGAATGTATCACTTCCACGAATATTTACATGTCCTTTGTGCAACGATAATTTGCCGACCTACCGTATGTTAAAGAATCACATGATTGGAATTCATGAGCTTGACCGTCAAGACCCCCTAATAATGAATCAAAAACCATTGTACGAATGCAATGAGTGTCAAGAGAAATTCAAGCATCAAATGTCGCTCAAGTCACACAAGGAAAAGGTACATGAAGGCAAAATTGTACCTCTTGCATTTCAGTGCgatatatgcaaaaatgtatacaaagcCAAACGATTCCTAATAAGGCATATTCAGAGTGAACacaatgataataaatgtCAGCAGTGTGATGAAACATTCACAGATAAAAAAGATCTTGATCATCACGTTTCATTACACAATAGTAAGATCGCATGCGAGTACTCTGACAAACAAAGGGATGCTAGGAATTTACATCACCAAGAACACACGATCATTTTTTACCAGTGTGGAGATTGCAACGAGTCATTCGATAGCTATGCTAATCGCTTAAATCATCGCAAAAAGATGCACAAACCCGAA
- Protein Sequence
- MSKMECDICRLCGIKFEFEHLKYIFDEVTNLAQIINETLPIKISQDDHFKYICLDCYDKVISHYNFIQNILVYSKECETRTVSFFEVNKNEKLEDVVISKLHSDMIYPCPNCNKDLIILINNNPSDSSHTFHASLALVNHIEQSQENNQISDNAEEFNVCTLKSRAQDKLYELSLYQNIINENTTNDNKCDIERKHGSLQKIDVSCKLKAGIKRKIHQSTSTKTFINPTKMQKLEAKLDTMERSFNELDSDYSKLNVTDLITFQSVNNDVECFGEEIKNEQESSTRDMIKKKYLGKSRIIRVKLNAKEQDESNSNYDKSNVTDLITLQSENDNIEYITDDKETEDDNIMVVAKMEEEYVNENDTNDINISKNNVKQECNLCGARYILQEKYEFHMERHKLNKIDKYVCTKCDKETKNENLLWDHYLHMHKSSIQYLCLKCKKVFMKKAHLIAHQKTCKFSDNETMLNIKTDVDNNQKIITRPRRKCKVCRKLIRDPNAINDEAMCASCKIRGISQRQYYCAKCHKHFMRQERLEFHKMRHNENMDEFICSTCGKEFSGENSLYEHYLFVHKGFRPHICEICGKSFQLKVRLKEHQRKHTGEMPYQCEVCGLRCRTTHALKFHKKSHVSNRHICEICGKSFLKKQNWNEHLERHWKKDKNVSLPRIFTCPLCNDNLPTYRMLKNHMIGIHELDRQDPLIMNQKPLYECNECQEKFKHQMSLKSHKEKVHEGKIVPLAFQCDICKNVYKAKRFLIRHIQSEHNDNKCQQCDETFTDKKDLDHHVSLHNSKIACEYSDKQRDARNLHHQEHTIIFYQCGDCNESFDSYANRLNHRKKMHKPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00182202;
- 90% Identity
- iTF_00014950;
- 80% Identity
- -