Tcor010460.1
Basic Information
- Insect
- Trachymyrmex cornetzi
- Gene Symbol
- -
- Assembly
- GCA_001594075.1
- Location
- NW:1183368-1187205[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.4 2.4e+02 2.0 0.3 1 8 107 114 107 116 0.91 2 14 0.18 13 6.0 0.4 2 23 378 399 377 399 0.94 3 14 0.0017 0.12 12.3 1.4 1 23 407 430 407 430 0.95 4 14 6.8e-05 0.0047 16.7 0.7 1 22 436 457 436 457 0.94 5 14 0.75 52 4.0 7.0 1 23 519 541 519 541 0.95 6 14 0.0014 0.097 12.6 0.4 1 23 548 571 548 571 0.92 7 14 5.9e-05 0.0041 16.9 2.1 1 23 577 599 577 599 0.97 8 14 0.1 6.9 6.8 5.6 1 23 605 627 605 627 0.97 9 14 0.00068 0.047 13.6 1.1 1 23 632 654 632 654 0.96 10 14 0.026 1.8 8.6 0.1 1 23 667 690 667 690 0.94 11 14 0.00011 0.0075 16.1 3.2 1 23 706 729 706 729 0.96 12 14 0.00098 0.068 13.1 0.8 1 23 738 761 738 761 0.97 13 14 0.00024 0.017 15.0 2.2 2 23 765 786 764 786 0.96 14 14 0.00013 0.0091 15.9 0.8 1 23 816 839 816 839 0.98
Sequence Information
- Coding Sequence
- atgtcTAAAATGGAATGTGATATATGCCGTCTATGTGGTATTAAATTTgagtttgaaaatttgaaacatATCTTTGATGAAGTAACTAATTTGGcacatataataaatgagaCTTTACCAATTAAGgTTTCACAAGATGattgtttcaaatatatatgtttagaCTGTTATGATAAAGTTAtcaatcattataattttattcaaaatatattaacatattcgAAGGAAAGTGAGACAAGAACTGTCTCTTTCTTTGAAgtcaataaaaatgagaaattggAAGATGTGGTGATTTCTAAGTTACACAGTGACATGATATATCCCTGTCCGAATTgcaataaagatttaataatcttaataaacAACAATCCTTCAGCTAGTAGTCATACATTTCATGTTTCATTGGCTCTTGTAAATCAAATAGAGCAATCGCAAGAGAATAATCAAATATCTGATAATGCAGAAGAGTTTAACGTTTGTACATCGAAATCAAGGGCACAAGATGAATTATCATTGAATCATGATATTATCAATGAGAATATAACAAATGATAATAAATGCAATATCAAAAGGAAGCATGATAGCTTGCGAAAAATTGATGTATCGTGTAAACTGACAACTGGTATAAAGAGAAAGATTCAACAAAGTACTTCTACGAAAACATTCGTTAATCCTACTAAGATGCCGAAATTAGAAGCAAACTTAGATACAATGGAACGAAGTTTTGATGAATTAGACAGTGATTACAGTAAATTAAACGTAACTAACTTTATAACATTTCAATCAGTAAACAATGATATAGAATGTCttaataaagaaatgaaaaatgaacAGGAATCTAGTACAGAGgatatgataaaaaagaaatatcttgACAATAATCTTGGTAAATCGCGAATAATTCGagtaaaattaaatgcaaaagAACAAGATGAATCAAATAGTAATGATGATAAGTCAAATATAACTGGCTTGATAACACTCCAGTCAGAAAACGATAATATTGAATACATTACTGATAATAAAGGAATTGAAGATGACAACATGATGGTCGTGACGAAAATGGAAGAAGAATGTGTCAACGAAAATGATACAAATGAcatcaatatttcaaaaaataatttaaaactagAATGCAATTTGTGTGGAACTCgttatattttacaagaaaaatatgAGTTTCACATGGAGAGacacaaattaaacaaaatagataaatacGTTTGTACAAAATGCGATAAAGaaactaaaaatgaaaatttgttgTGGGATCATTACCTTCACATGCACAATAGCTCAATACAGTACCTTTGcttgaaatgtaaaaaagtatTCACGAAAAAGGCATATTTAATTGCGCATCAGAAAACGTGCAAATTCTCTAATAACGAAACAatgctaaatattaaaacaGATGTGGATAACAATCAGAAGATTATTACAAGACCGAGGCGAAAATGCAAAGTCTGCAGAAAATTGATCAGAGATCCTAATGCTATTAGCGATGAAGTAATGTGCGCCTCCTGTAAAATAAGAGGAATTTCCCAGCGACAATATTACTGTGCAAAGTGCCATAAACACTTTATGCGTCAGGAGAGACTCGAGTTCCACAAGATGCGGCATAATGAGAATATGGACGAGTTTATCTGCAGCACGTGCGGTAAAGAATTCAGTGGGGAAAATTCTTTATACGAACATTATCTCTTTGTGCATAAGGGATTTAGACCACATATTTGCGAAATATGCGGCAAGTCATTTCAGCTGAAGGTGCGATTGAAGGAACATCAACGAAAACATACTGGTGAGATGCCTTATCAATGTGAAGTATGCGGCCTGCGATGTAGGACTACACATGCATTAAAATTCCACAAGAAGTCTCATGTCTCTAATCGTCACATTTGCGAGATATGTGGCAAATCGTTCCTTAAAAAGCAGAATTGGAATGAACATCTGGAGAGACACTGGAAGAAAGACAAGAATGTATCACTTCCACGAATATTTACGTGTCCTGTGTGCAACGATAATTTGCCGACCTACCGTATGTTAAAGAATCACATGATTGGAATTCATGAGCTTGACTGTCAAGACCCTCTAATAATGAATCAAAAACCATTGTATGAATGCAACGAGTGTCAAGAAAAATTCAAGCATCAAATGTCGCTCAAGTCACACAAGGAAAAGGTACACGAAGGTAAAATTGTACCTCTTGCATTTCAGTGTGATATATGCAAAAATGTATACAAAGCCAAACGATTCCTAATAAAGCATATTCAAAGTGAGCACAATGACAATAAATGTCAGCAGTGTGATGAAACATTCACAGATAAAAAAGATCTTGATCATCACGTTTCACTACACAATAGTAAGAAGCTGTTTGCATGCGAATACTCTGACAAACGAAGGGATGCTAGGAACTTAAATCACCAAGAACACACGATCATTTTTTACCAGTGTGGAGATTGCAACGAGTCATTCGATAGCTATGCTAATCGCTTAAATCATCGCAAAACGATGCATAAACCCGAGTGA
- Protein Sequence
- MSKMECDICRLCGIKFEFENLKHIFDEVTNLAHIINETLPIKVSQDDCFKYICLDCYDKVINHYNFIQNILTYSKESETRTVSFFEVNKNEKLEDVVISKLHSDMIYPCPNCNKDLIILINNNPSASSHTFHVSLALVNQIEQSQENNQISDNAEEFNVCTSKSRAQDELSLNHDIINENITNDNKCNIKRKHDSLRKIDVSCKLTTGIKRKIQQSTSTKTFVNPTKMPKLEANLDTMERSFDELDSDYSKLNVTNFITFQSVNNDIECLNKEMKNEQESSTEDMIKKKYLDNNLGKSRIIRVKLNAKEQDESNSNDDKSNITGLITLQSENDNIEYITDNKGIEDDNMMVVTKMEEECVNENDTNDINISKNNLKLECNLCGTRYILQEKYEFHMERHKLNKIDKYVCTKCDKETKNENLLWDHYLHMHNSSIQYLCLKCKKVFTKKAYLIAHQKTCKFSNNETMLNIKTDVDNNQKIITRPRRKCKVCRKLIRDPNAISDEVMCASCKIRGISQRQYYCAKCHKHFMRQERLEFHKMRHNENMDEFICSTCGKEFSGENSLYEHYLFVHKGFRPHICEICGKSFQLKVRLKEHQRKHTGEMPYQCEVCGLRCRTTHALKFHKKSHVSNRHICEICGKSFLKKQNWNEHLERHWKKDKNVSLPRIFTCPVCNDNLPTYRMLKNHMIGIHELDCQDPLIMNQKPLYECNECQEKFKHQMSLKSHKEKVHEGKIVPLAFQCDICKNVYKAKRFLIKHIQSEHNDNKCQQCDETFTDKKDLDHHVSLHNSKKLFACEYSDKRRDARNLNHQEHTIIFYQCGDCNESFDSYANRLNHRKTMHKPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00182202;
- 90% Identity
- iTF_00014950;
- 80% Identity
- -