Tsep000644.1
Basic Information
- Insect
- Trachymyrmex septentrionalis
- Gene Symbol
- -
- Assembly
- GCA_001594115.1
- Location
- NW:4027928-4030075[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.17 11 6.0 0.4 2 23 151 172 150 172 0.94 2 14 0.0013 0.079 12.7 1.4 1 23 180 203 180 203 0.95 3 14 0.00026 0.016 14.9 0.9 1 22 209 230 209 230 0.93 4 14 0.54 34 4.5 7.0 1 23 292 314 292 314 0.95 5 14 0.00059 0.037 13.8 0.3 1 23 321 344 321 344 0.94 6 14 0.00041 0.026 14.2 2.7 1 23 350 372 350 372 0.97 7 14 0.04 2.5 8.0 5.6 1 23 378 400 378 400 0.97 8 14 9.7e-05 0.0061 16.2 1.3 1 23 405 427 405 427 0.97 9 14 0.018 1.2 9.1 0.1 1 23 440 463 440 463 0.94 10 14 7.7e-05 0.0049 16.5 3.2 1 23 479 502 479 502 0.96 11 14 0.00051 0.032 14.0 0.7 1 23 511 534 511 534 0.97 12 14 0.00011 0.0068 16.1 2.6 2 23 538 559 537 559 0.97 13 14 0.00021 0.013 15.2 1.0 1 23 589 612 589 612 0.98 14 14 2.5 1.6e+02 2.3 0.1 4 23 617 636 617 636 0.94
Sequence Information
- Coding Sequence
- ATGCAGAAATTAGAAGCAAAATTAGATACAATGGAACAAAGTTTTAATGAATTAGACAGTGATTAcagtgaattaaatataactgaCTTAATAACATTTCATCAATCAGTAAACAATGATATAGAATAtcttgaagaaataaaaaatgaacaggAATCTAATACAGGggatatgataaaaaagaaatatcttggCAATAATCTTGGTAAATCGCGAATAATTCgagtaaaattaaatgcaaaagaACAAGAtcaattaaatagtaattatgaTAAGTCAAATATAACTGGTTTGATAACACTCCAGTCAAGAAACGATAATGTTGAATACATCACTGATGATAAAGGAATTGAAGATGACAACATAATCGTCGTGACCAAAATGGAAGAAGAATGTGTCAATGAAAATGATACAAATGACatcaatatttcgaaaaataatgtaaaacaagAATGCAATTTGTGTGGAACTCgttatattttgcaagaaaaatatgaGTTTCACATGGAGAGAcacaaattaaacaaaatggaTAAATACGTTTGTACAAAATGCGATAAAGAaactaaaaatgaaaacttGTTGTGGGATCATTACCTTCATATGCACAAAAGCTCAATACAGTACCTTtgtttgaaatgtaaaaaagtattcATGAAAAAAGCACATTTAATTGCGCATCAGAAAATGTGCAAATTCTCTGATAATGAAACAatgctaaatattaaaacagatGTGGATAACAATCAGAAGATTATTACAAGACCGAGACGAAAATGCAAAGTCTGCAGAAAATTGATCAGAGATCCTAATGCTATTAACGATGAAGCAATGTGCGCCTCCTGTAAAATAAGAGGAATTTCCCAGCGACAATATTACTGTGCGAAGTGCCATAAACACTTTATGCGTCAGGAGAGACTCGAGTTTCACAAGATGCGACATAATGAGAATATGAACGAGTTTATCTGCAGCACGTGCGGTAAGGAATTCAGTGGGGAAAATTCTTTGTACGAACATTATCTCTATGTACATAAAGGATTTAGACCACATATTTGCGAAAGATGTGGCAAGTCATTTCAACTGAAGGTGCGATTAAAAGAACATCTGCGAAAACATACTGGTGAAATGCCTTATCAATGTGAAATATGTGGTCTGCGATGTAGGACTACACATGCATTAAAATTTCACAAGAAGTCTCATGTCTCTAATCGCCACACTTGCCCGATATGTGGCAAATCATTCCTTAAGAAGCAGAATTGGAATGAACATCTGGAGAGACACTGGAAGAAAGATAAGAGCGTATTACTTCCACAAATATTTACGTGTCCTGTGTGCAACGATAATTTGCCGACCTACCGTATGTTAAAGAATCATATGATTGGAATTCATAAGCTTGACCGTCAAGATCCCCtagtaataaatcaaaaacCATTGTACGAATGCAACGAGTGTCAAGAAAAATTCAAGCATCAAATGTCGCTCAAGTCACACAAGGAAAAGGTGCATGAAGGTAAAATTGTACCTGTTACATTTCAGTGTgatatatgcaaaaatgtatacaaagcCAAACGATTTCTAATAAGGCATATTCAGAGTGAGCACAATGACAATAAATGTCAACAGTGTAATGAAACATTCACAGATAAAAAAGATCTTGATCATCACATTTCACTACACAATAGTAAGAAGCTGTCCGCATGCGAATACTCTGACAAACAAAGGGATGCTAGGAATTTACATCACCAAGAACACACGATCATTTTTTACCAGTGTGGAGATTGCAACGAGTCATTCGATAGCTATGCTAATCGCTTAAATCATCGCAAAAAGATGCACAAACCCGAGTGACCagaatgcaaaattaaatacaacaaTATGCAACAAATTACAATTCATCTGGACAAACATCTTCGTGAAAAATTGAGTAAATTAGATTCCAAGTAA
- Protein Sequence
- MQKLEAKLDTMEQSFNELDSDYSELNITDLITFHQSVNNDIEYLEEIKNEQESNTGDMIKKKYLGNNLGKSRIIRVKLNAKEQDQLNSNYDKSNITGLITLQSRNDNVEYITDDKGIEDDNIIVVTKMEEECVNENDTNDINISKNNVKQECNLCGTRYILQEKYEFHMERHKLNKMDKYVCTKCDKETKNENLLWDHYLHMHKSSIQYLCLKCKKVFMKKAHLIAHQKMCKFSDNETMLNIKTDVDNNQKIITRPRRKCKVCRKLIRDPNAINDEAMCASCKIRGISQRQYYCAKCHKHFMRQERLEFHKMRHNENMNEFICSTCGKEFSGENSLYEHYLYVHKGFRPHICERCGKSFQLKVRLKEHLRKHTGEMPYQCEICGLRCRTTHALKFHKKSHVSNRHTCPICGKSFLKKQNWNEHLERHWKKDKSVLLPQIFTCPVCNDNLPTYRMLKNHMIGIHKLDRQDPLVINQKPLYECNECQEKFKHQMSLKSHKEKVHEGKIVPVTFQCDICKNVYKAKRFLIRHIQSEHNDNKCQQCNETFTDKKDLDHHISLHNSKKLSACEYSDKQRDARNLHHQEHTIIFYQCGDCNESFDSYANRLNHRKKMHKPE*PECKIKYNNMQQITIHLDKHLREKLSKLDSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00014950;
- 80% Identity
- -