Ains006293.1
Basic Information
- Insect
- Acromyrmex insinuator
- Gene Symbol
- -
- Assembly
- GCA_017607455.1
- Location
- JAANHZ010000870.1:1403334-1405913[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.3 1.7e+02 2.0 0.3 1 8 104 111 104 113 0.91 2 14 0.61 31 4.4 0.2 2 23 334 355 333 355 0.94 3 14 0.0017 0.085 12.4 1.4 1 23 363 386 363 386 0.95 4 14 0.00027 0.014 14.9 1.1 1 22 392 413 392 413 0.94 5 14 0.72 36 4.1 7.0 1 23 475 497 475 497 0.95 6 14 0.0014 0.068 12.7 0.4 1 23 504 527 504 527 0.92 7 14 5.7e-05 0.0029 17.0 2.1 1 23 533 555 533 555 0.97 8 14 0.096 4.9 6.9 5.6 1 23 561 583 561 583 0.97 9 14 0.00066 0.033 13.7 1.1 1 23 588 610 588 610 0.96 10 14 0.04 2 8.1 0.1 1 23 623 646 623 646 0.94 11 14 0.0001 0.0053 16.2 3.2 1 23 662 685 662 685 0.96 12 14 0.00068 0.034 13.6 0.7 1 23 694 717 694 717 0.97 13 14 0.00023 0.012 15.1 2.2 2 23 721 742 720 742 0.96 14 14 0.00028 0.014 14.9 1.0 1 23 770 793 770 793 0.98
Sequence Information
- Coding Sequence
- atggaatGTGATATATGCCGTCTATGTGgtattaaatttgagtttgaacatttgaaatatatctttgatGAAGTAACTAATTTGGCACAGATAATAAATGAGACTTTACCAATTAAGatttcacAAGATGatcatttcaaatatatatgtttagactgttatgataaagttatcagtcattataattttattcaaaatatattagtatacTCGAAGGAATGTGAGACAAGAACTGTCTCTTTCTTTGAagtcaataaaaatgaaaaattggaaGATGTGGTGATTTCTAAGTTACACAGTGACATGATATATCCCTGTCCGAATtgcaataaagatttaataatcttaataaacaATCCTTCAGATAGTAGTCATACATTTCATGCTTCATTGGCTCTTGTAAATCAAATAGAACAATCGCAAGAGAATAATCAAATATCTGATAATGCAGAAGAGTTTAACGTTTGTACATTGAAATCAAGGGCacaagataaattatatgaatcattgtatcaaaatattatcaatgaaaatacaacaaatgataataaatgcgATATCAAAAGGAAACATGGTAACTTGCAAAAAATTGATGTATCATGTAAACTGAAAGCAGGTATAAAGAGAAAgattcatcaaaatatttctatgaaaACATTCATTAATCCTACTAAGATGCAGAAATTAGAAGCAAAATTAGATACAATGGAACGAAGTTTTAATGAATTAGACAGTGATTacagtaaattaaatgtaactgACTTAATAACATTTCAATCAGTAAACAATGGTGTAGAATATGAATCAAATAGTAATTATGATAAGTCAAACGTAACTGATTTGATAACACTCCAGtcagaaaatgataatattgaataCATCACTGATGATAAAGGAATTGAAGATGACAACATAATGGTCGTGACCAAAATGGAAGAAGAATATGTCAATGAAAATGATACAAATGAcatcaatatttcaaaaaataatttaaaacaagaatGCAATTTATGTGGAGCtcgttatattttacaagaaaaatatgaatttcacATGGAGAgacacaaattaaataaaatagataaatatgtttgtacaaaatgtgataaagaaactaaaaatgaaaacttgTTGTGGGATCACTACCTTCACATGCACAAAAGCTCAATACAGTATCTTtgtttgaaatgtaaaaaagtattCATGAAAAAGGCACATTTAATTGCGCATCAGAAAACGTGTAAATTCTCTGATAATGAAACAatgctaaatattaaaacagatGTGGATAacaatcagaaaattattacaagaCCGAGGCGAAAATGCAAAGTCTGCAGAAAATTGATTAGAGATCCTAATGCTATTAACGATGAAGCAATGTGCGCCTCCTGTAAAATAAGAGGAATTTCCCAGCGACAATATTACTGTGCAAAGTGCCATAAACATTTTATGCGTCAGGAGAGACTCGAATTCCACAAGATGCGACATAATGAGAATATGGACGAGTTTATCTGCAGCACGTGCGGTAAGGAATTCAGTGGGGAAAATTCTTTATACGAACATTATCTCTTTGTGCATAAGGGATTTAGACCacatatttgtgaaatatgCGGCAAGTCATTTCAGCTGAAGGTGCGATTGAAGGAACATCAGCGAAAACATACTGGTGAGATGCCTTATCAATGTGAAGTATGTGGCCTGCGATGTAGGACTACACatgcattaaaatttcataagaaATCTCATGTCTCTAATCGCCACATTTGCGAGATATGTGGCAAATCGTTCCTTAAAAAGCAGAATTGGAATGAACATCTGGAGAGACACTggaaaaaagataagaatgTATCACTTCCACGAATATTTACATGTCCTTTGTGCAACGATAATTTGCCGACCTATCGTATGTTAAAGAATCACATGATTGGAATTCATGAGCTTGACCGTCAAGACCCCCTAATAATGAATCAAAAACCATTGTACGAATGCAATGAGTGTCAAGAGAAATTCAAGCATCAAATGTCGCTCAAGTCGCACAAGGAAAAGGTACATGAAGGCAAAATTGTACCTCTTGCATTTCAGTGCgatatatgcaaaaatgtatacaaagCCAAACGATTCCTAATAAGGCATATTCAAAGTGAACacaatgataataaatgtCAGCAGTGTGATGAAACATTCACAGATAAAAAAGATCTTGATCATCATGTTTCATTACACAATAGTAAGATCGCATGTGAGTACTCTGACAAACAAAGGGATGCTAGGAACTTACATCACCAAGAACACACGATCATTTTTTACCAGTGTGGAGATTGCAACGAGTCATTCGATAGCTATGCTAATCGCTTAAATCATCGCAAAAAGATGCACAAACCCGAG
- Protein Sequence
- MECDICRLCGIKFEFEHLKYIFDEVTNLAQIINETLPIKISQDDHFKYICLDCYDKVISHYNFIQNILVYSKECETRTVSFFEVNKNEKLEDVVISKLHSDMIYPCPNCNKDLIILINNPSDSSHTFHASLALVNQIEQSQENNQISDNAEEFNVCTLKSRAQDKLYESLYQNIINENTTNDNKCDIKRKHGNLQKIDVSCKLKAGIKRKIHQNISMKTFINPTKMQKLEAKLDTMERSFNELDSDYSKLNVTDLITFQSVNNGVEYESNSNYDKSNVTDLITLQSENDNIEYITDDKGIEDDNIMVVTKMEEEYVNENDTNDINISKNNLKQECNLCGARYILQEKYEFHMERHKLNKIDKYVCTKCDKETKNENLLWDHYLHMHKSSIQYLCLKCKKVFMKKAHLIAHQKTCKFSDNETMLNIKTDVDNNQKIITRPRRKCKVCRKLIRDPNAINDEAMCASCKIRGISQRQYYCAKCHKHFMRQERLEFHKMRHNENMDEFICSTCGKEFSGENSLYEHYLFVHKGFRPHICEICGKSFQLKVRLKEHQRKHTGEMPYQCEVCGLRCRTTHALKFHKKSHVSNRHICEICGKSFLKKQNWNEHLERHWKKDKNVSLPRIFTCPLCNDNLPTYRMLKNHMIGIHELDRQDPLIMNQKPLYECNECQEKFKHQMSLKSHKEKVHEGKIVPLAFQCDICKNVYKAKRFLIRHIQSEHNDNKCQQCDETFTDKKDLDHHVSLHNSKIACEYSDKQRDARNLHHQEHTIIFYQCGDCNESFDSYANRLNHRKKMHKPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00182202;
- 90% Identity
- iTF_00014950;
- 80% Identity
- -