Alat036139.1
Basic Information
- Insect
- Acleris laterana
- Gene Symbol
- -
- Assembly
- GCA_963966035.1
- Location
- OZ014466.1:8888329-8889879[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0029 58 5.0 0.0 26 48 80 102 77 108 0.90 2 8 0.099 2e+03 0.1 0.1 25 48 109 132 101 138 0.81 3 8 0.00076 15 6.9 0.3 21 48 164 191 158 194 0.88 4 8 0.13 2.6e+03 -0.2 0.1 22 48 195 221 192 222 0.84 5 8 2.1e-05 0.41 11.9 0.0 20 44 251 275 243 281 0.87 6 8 0.00034 6.8 8.0 0.1 17 48 316 347 313 351 0.87 7 8 0.00041 8.1 7.8 1.0 23 48 350 375 347 380 0.89 8 8 0.0084 1.7e+02 3.6 0.3 24 48 381 405 376 410 0.85
Sequence Information
- Coding Sequence
- ATGGAGCATGAAATAGAGCATATCGATATTAAGCCGGATGTAGGCCACTTGAAGGTCGACGTCAATTACCAGCCGGATCCTTACCAAAGCCCTGAATCTGTATTTGGAATACAACCAGAACAAAACGATAGAGAAATTATACCGggatataataatgaaaatgaagaTACCGAGAAAACTAATAGTGCAATTGAAATAGTGGGGAAAGTATACGAGAACGGGAAAGTGAATCGCCTACAGTGTCCCCAATGTGATAATTCGTTCAAAAATAGAGCAAATTTAAAGCAGCATTTGAAATTTGTACACTCTTCAGAAGATGATATAGTGGAATGCGAGAAGTGCTATAGAACCTTCAAATCTATTGGACATTTAAGGTCTCATATTCATTCAGTACACTCAGAGGAAAAGGAAGTGAAGTGCGAACATTGCGGCAAAGTTTTTTTGAACAAGAAACGTTTGAACaaccatattttttattctcATCCCGAGCCTGAGGAAAGTGTTAATTGTCAGGTGTGTTCAAAGGTTTTTAAACGAAGATATAATCTTAAAATTCATATGAGGTTAGTTCATCCTTCCGATGAAAGGTCAGTTCAATGTCCGCACTGCGACAAGAAGTTTAAAGTGGATATGTTGCTTCAACGGCATATAAAATGGAGCCATCCTGATGACGGGATGATGTATCGCTGTGCTGAGTGTGGGAGAACGCTGCCATCGCTTGCCTGCTTCAGAAAACACATGCAGAATGTTCATTCATCGCAAGATGCTGTCTGCACTATTTGTTATAAGCCGTTTAAAACTATGAAAACTCTGAAAAGGCATGAGAAACATATACACGGAGAGGAGAAATTAGAAACAAAACCGCCTAAAATAGGCGATTTACAATGTTCACGATGCGAAAGAAAATTTACTACAAACACTGCCTTGTTTTGGCATTTTGAACGATACCACTCAGAGAATAAGAGGAGTAATGCTTGTCAGATATGCGAGAAGGAGTTGTCAGACTATGGTAGCTTGAAACGACATTTGGAAATGGTGCACTCTGTGGAGTCAGCGCAGTGCCATATTTGCTCAAAAACTTTTAAAAGCCATATGAATTTACAGAGGCATATTCGAGTTACCCACGCCCCACCTGAAGCTGCCCAGAACTGTGATATTTGCAATAAAACATTCAAATGCTCCATGCATTTGAGAATACATATAAACGCAGTTCACTCAAAAGAAGGTATTTTCACTTGCGATGTTTGTAACAAACAGTTTTCCTCTAAGAAGTACATGTTGAAACATAAGAAGATTCACGTTGATGTCAAGGAGTACCCTTGCGAGACTTGTAATAAGTTGTTTAAATGTGTCAATGATGTTAAGAAACACGCGAAACGCGTTCATTTAAAACCGCTGGTTAAACCAAACGAACTGAATTGTGTGAAATGTGCAAGTAATTTTACTACTGAACTAGAATTACACGACCACATTTTAACCTGTGGAGAATCGGTTATGGTGTCGTATGTTAAAGTCGAAATTGTTGAAATGCCAGACGATGATAGTGTGTAG
- Protein Sequence
- MEHEIEHIDIKPDVGHLKVDVNYQPDPYQSPESVFGIQPEQNDREIIPGYNNENEDTEKTNSAIEIVGKVYENGKVNRLQCPQCDNSFKNRANLKQHLKFVHSSEDDIVECEKCYRTFKSIGHLRSHIHSVHSEEKEVKCEHCGKVFLNKKRLNNHIFYSHPEPEESVNCQVCSKVFKRRYNLKIHMRLVHPSDERSVQCPHCDKKFKVDMLLQRHIKWSHPDDGMMYRCAECGRTLPSLACFRKHMQNVHSSQDAVCTICYKPFKTMKTLKRHEKHIHGEEKLETKPPKIGDLQCSRCERKFTTNTALFWHFERYHSENKRSNACQICEKELSDYGSLKRHLEMVHSVESAQCHICSKTFKSHMNLQRHIRVTHAPPEAAQNCDICNKTFKCSMHLRIHINAVHSKEGIFTCDVCNKQFSSKKYMLKHKKIHVDVKEYPCETCNKLFKCVNDVKKHAKRVHLKPLVKPNELNCVKCASNFTTELELHDHILTCGESVMVSYVKVEIVEMPDDDSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00009670; iTF_00010415; iTF_00009329; iTF_01464375; iTF_00009311;
- 90% Identity
- iTF_00009670; iTF_00010415; iTF_00009329; iTF_00009311;
- 80% Identity
- iTF_00010415;