Tvir025353.1
Basic Information
- Insect
- Tortrix viridana
- Gene Symbol
- -
- Assembly
- GCA_963241965.1
- Location
- OY725199.1:7314718-7316259[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7e-06 0.00056 20.9 1.0 2 23 80 102 79 102 0.94 2 13 0.00044 0.035 15.2 2.8 2 23 110 132 109 132 0.95 3 13 0.0019 0.16 13.2 1.1 2 23 139 161 138 161 0.93 4 13 4.5e-07 3.6e-05 24.6 0.6 3 23 170 191 168 191 0.95 5 13 3e-05 0.0024 18.9 1.2 2 23 199 221 198 221 0.96 6 13 8.2e-06 0.00066 20.7 0.6 1 23 228 251 228 251 0.97 7 13 0.00057 0.046 14.9 3.1 2 23 257 279 257 279 0.94 8 13 0.00019 0.015 16.4 1.7 2 23 295 317 294 317 0.94 9 13 6.8e-05 0.0055 17.8 0.4 2 23 325 347 325 347 0.95 10 13 6.8e-06 0.00054 20.9 5.7 2 23 353 375 353 375 0.97 11 13 0.0046 0.36 12.0 6.4 3 23 384 405 382 405 0.96 12 13 4.7e-05 0.0038 18.3 4.2 1 23 411 433 411 433 0.98 13 13 0.29 24 6.3 1.6 1 23 439 462 439 462 0.93
Sequence Information
- Coding Sequence
- ATGGAGAATGAAATCGAGCAGATCTACATAAAGCCAGATATAGGCCACCTAAAAGTCGAGGTTAACCACCAACCGGATCCTTACCAAACCCCGGAAACCGTATTTGGGTTGCAACAAGTACAAAATGCTAATGAAATAGCTCCAGAAAATGATAACGAAAATGAAGTAAACACAAAAACTAATGGTGTTATTGAAATAGTTGGAAAAGTATATGAAAATGGCAAAGTAAATAGGCTACAGTGTCCCCAATGTGATAATACGTTCAAAAACAGAGCAAATTTGAAGCAGCATTTGAAATTTGTACACTCTTCTGAAGATGATATAGTGGAATGTGAGAAATGCTATAGGACCTTCAAGTCGGTTGGTCATTTAAGGTCTCATATTCATTCCGTACATGCAGAAGAAAAGGAAGTCAAGTGTGAGCAATGCGGGAAAGTTTTTCTAAACAAGAAAAGATTGAacaatcatattttttattctcaCCCAGAGCCCGAAGAAAGTGTCAATTGTGAGGTGTGTTCTAAGGCTTTTAAAAGAAGATATAATCTTAAAATACATATGCGGTTAGTTCATCCATCTGAGGACAGGTCTGTTCAATGTCCGCACTGTGACAAGAAGTTTAAAGTTGATATGTTGCTTCAACGGCATATTAAATGGAGTCACCCAGATGACGGGATGATGTATCGCTGTCCTGAATGCGGCAGAACGCTGCCTTCGCTTGCTTGCTTAAGAAAGCACATGCAGAACGTCCATTCTTCACAAGATGCGGTCTGTACTATATGTTATAAGGAAttcaaaacattgaaaactCTGAAACGGCACGAAAAACATATACACGGAGAGGAGAAATTAGAAACGAAGCCACCTAAAATAGGTGATTTAAAATGCTCTCAATGTGATAGGAAATTTACTACAAACACTGCCTTGTTTTGGCATTTTGAGCGGTACCACTCAGAAAATAAAAGGAGTAATGTTTGTCAGATATGTGGGAAGGAGTTGTCAGACCACGGTAGTTTGAAACGACATTTGGAAATGGTGCATTCTTTAGAAACAGCGCAATGCCATGTATGCTCAAAAACTTTTAAAAGCCATATGAATTTACAAAGGCATATTAGAGTTACCCACGCCCCGCCTGAAGCTGCCCAGAATTGTGATATTtgccataaaacttttaaatgttCAATGCATTTAAGGATACATATAAACACGGTACACTCGAAAGAAGGTATTTTTACTTGCGACATGTGTAACAAGGAGTTTTCTTCAAAGAAATACATGTTGAAGCATAAGAAGACCCATGTGGATGTTAAATCTTACCCATGCGATGTATGTAATAAGTTGTTTAAATGTGTTAATGACGTTAAAAAACATGCTAAACGCGTTCATATGAAAAAGGTTAAATCTAATGAGCTGAATTGTGTCAAATGTGCAAGTAATTTTAACAGTGAATTAGAATTGCATGACCACATTTTAAACTGTGGAGAAACACTTATATCTTATGTTAAAGTCGAACTGGAAGAGATGCAAGATGATAGTGTATAG
- Protein Sequence
- MENEIEQIYIKPDIGHLKVEVNHQPDPYQTPETVFGLQQVQNANEIAPENDNENEVNTKTNGVIEIVGKVYENGKVNRLQCPQCDNTFKNRANLKQHLKFVHSSEDDIVECEKCYRTFKSVGHLRSHIHSVHAEEKEVKCEQCGKVFLNKKRLNNHIFYSHPEPEESVNCEVCSKAFKRRYNLKIHMRLVHPSEDRSVQCPHCDKKFKVDMLLQRHIKWSHPDDGMMYRCPECGRTLPSLACLRKHMQNVHSSQDAVCTICYKEFKTLKTLKRHEKHIHGEEKLETKPPKIGDLKCSQCDRKFTTNTALFWHFERYHSENKRSNVCQICGKELSDHGSLKRHLEMVHSLETAQCHVCSKTFKSHMNLQRHIRVTHAPPEAAQNCDICHKTFKCSMHLRIHINTVHSKEGIFTCDMCNKEFSSKKYMLKHKKTHVDVKSYPCDVCNKLFKCVNDVKKHAKRVHMKKVKSNELNCVKCASNFNSELELHDHILNCGETLISYVKVELEEMQDDSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00010764;
- 90% Identity
- -
- 80% Identity
- -