Ahol039190.1
Basic Information
- Insect
- Acleris holmiana
- Gene Symbol
- -
- Assembly
- GCA_949316455.1
- Location
- OX438790.1:649457-651004[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0029 64 5.0 0.0 26 48 80 102 77 108 0.90 2 9 0.065 1.4e+03 0.7 0.1 25 48 109 132 102 138 0.82 3 9 0.00098 22 6.5 0.2 22 48 165 191 159 196 0.90 4 9 0.12 2.7e+03 -0.2 0.1 22 48 195 221 191 222 0.84 5 9 7e-06 0.16 13.4 0.0 20 44 251 275 243 282 0.87 6 9 0.00025 5.6 8.4 0.1 17 48 316 347 313 351 0.87 7 9 0.00046 10 7.6 0.7 23 48 350 375 347 380 0.89 8 9 0.0084 1.9e+02 3.6 0.3 24 48 381 405 376 410 0.85 9 9 1.1 2.5e+04 -3.2 0.1 27 48 441 462 440 470 0.59
Sequence Information
- Coding Sequence
- ATGGAGCATGAAATCGAGCACATCGACATAAAGCCAGATATAGGCCACTTGAAAGTTGAAATCAATTATCAACCGGACCCATACCAAACCCCTGAAACGGTATTTGGGCTACAACCAGAGCAAAATGATAGAGAAATCACAACGAATCATAATAATGGAAGTAATCGCAACGTGAAAACTAATAGTGCCATTGAAATAGTTGGAAAAGTATATGAAAATGGTAAAGTGAATCGGCTACAGTGTCCCCAATGTGATAATTCGTTTAAGAACAGAGCAAATTTAAAGCAGCATTTAAAATTTGTTCACTCCTCTGAAGATGATATAGTGGAATGTGATAAATGCTACAGGACCTTCAAGTCCGTTGGACATTTAAGGTCTCATATTCATTCTGTACATGCAGAAGAGAAAGAAGTGAAGTGTGAACACTGCGGTAAAGTTTTTCTGAACAAGAAACGTTTGAacaatcatattttttatgccCATCCGGAGCCTGAGGAAAGTGTCAATTGTGAGGTGTGTTCAAAGGTTTTTAAACGAAGATATAATCTTAAAATTCATATGAGGTTAGTTCATCCATCTGATGAACGGTCTGTTCAGTGTCCGCACTGTGACaagaagtttaaagtggatatgtTGCTTCAACGGCATATTAAATGGAGTCACCCGGATGATGGGATGATGTATCGTTGTACTGAGTGTGGTAGAACGCTGCCTTCGCTTGCTTGTTTCAAGAAACACATGCAGAATGTTCATTCTTCACAGGATGCTGTCTGCACTATATGTTATAAAGCGTTTAAAACTATGAAAACTCTTAAACGGCATGAAAAACAGATACATGGAAAGGAGAAAGTAGAAACGAAGCCGCCTAAAATAGGGGATCTACCATGCTCACGGTGCGATAGAAAATTTACTACGAACACTGCCTTGTTCTGGCATTTTGAACGCTACCACtcagaaaataaaagaagcaaCGCTTGTCAGATATGCGAGAAAGAGCTGTCAGACCATGGTAGTTTGAAACGGCATTTAGAAATGGTGCATTCTGTAGAATCAGCGCAGTGCCATATTTGCtcaaaaacttttaaaagttACATGAATTTACAAAGGCATATTAGAGTGACCCATGCTCCACCTGAAGCTGCCCAGAATTGTGATATTTGcaataaaacttttaaatgcTCGATGCATTTAAGAATTCATATAAACGCTGTGCACTCGAAGGAAGGTATTTTTACATGTGATGTGTGTAACAAGGAGTTTTCCTCTAAGAAGTACATGTTAAAGCATAAGAAAACCCATGTCGACGTGAAGGAGTACCCTTGCGAGGTTTGTAATAAGTTGTTTAAATGTGTTAATGATGTTAAGAAACACGCGAAACGCGTTCATTTAAAGCCAGCAGCTAAACCTGACGAGCTGAATTGTGTGAAATGCgcaagtaattttaatagcgaATTAGAATTACACGATCATATATTAACGTGCGGAGAATCGCTTATGTTGTCGTTTGTTAAAGTAGAAATTGTTGAAATGCAAGATGATAGTGTATAG
- Protein Sequence
- MEHEIEHIDIKPDIGHLKVEINYQPDPYQTPETVFGLQPEQNDREITTNHNNGSNRNVKTNSAIEIVGKVYENGKVNRLQCPQCDNSFKNRANLKQHLKFVHSSEDDIVECDKCYRTFKSVGHLRSHIHSVHAEEKEVKCEHCGKVFLNKKRLNNHIFYAHPEPEESVNCEVCSKVFKRRYNLKIHMRLVHPSDERSVQCPHCDKKFKVDMLLQRHIKWSHPDDGMMYRCTECGRTLPSLACFKKHMQNVHSSQDAVCTICYKAFKTMKTLKRHEKQIHGKEKVETKPPKIGDLPCSRCDRKFTTNTALFWHFERYHSENKRSNACQICEKELSDHGSLKRHLEMVHSVESAQCHICSKTFKSYMNLQRHIRVTHAPPEAAQNCDICNKTFKCSMHLRIHINAVHSKEGIFTCDVCNKEFSSKKYMLKHKKTHVDVKEYPCEVCNKLFKCVNDVKKHAKRVHLKPAAKPDELNCVKCASNFNSELELHDHILTCGESLMLSFVKVEIVEMQDDSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00010764;
- 90% Identity
- iTF_00010764;
- 80% Identity
- iTF_00009329; iTF_00009311;