Zimm008007.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zonitis immaculata
Gene Symbol
SCRT1
Assembly
GCA_037414775.1
Location
JAZBGX010002568.1:2148-4708[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 9.6 5.5e+02 1.1 0.1 3 10 59 66 54 74 0.66
2 13 0.00022 0.013 15.7 0.1 1 23 315 337 315 337 0.95
3 13 1.4e-05 0.00081 19.4 1.5 1 23 345 367 345 367 0.99
4 13 7.8e-06 0.00045 20.2 0.2 2 23 375 396 374 396 0.97
5 13 4.7e-06 0.00027 20.9 1.2 1 23 402 424 402 424 0.98
6 13 0.00015 0.0086 16.2 2.0 1 23 431 453 431 453 0.99
7 13 9.6e-06 0.00056 20.0 1.3 1 23 459 481 459 481 0.96
8 13 7.4e-06 0.00043 20.3 0.6 1 23 487 509 487 509 0.98
9 13 3.1e-07 1.8e-05 24.7 0.8 1 23 515 538 515 538 0.96
10 13 2.1e-05 0.0012 18.9 0.3 1 23 544 567 544 567 0.96
11 13 8.5e-06 0.00049 20.1 4.5 1 23 573 595 573 595 0.99
12 13 0.00011 0.0063 16.6 0.4 1 23 601 623 601 623 0.94
13 13 0.00072 0.041 14.1 0.1 1 23 629 653 629 653 0.94

Sequence Information

Coding Sequence
ATGTCGTCGAATACGTTGTGCTTAATTTGCAATGGGAGTTGCGCATCCAGTCGAAATTCTGTACAAATATTCAACAAGGAgATAAAATTGTACTCAGATGTCGCTCTAGTTGAtgtaatatcgaaaattttagaaaCCGAACTACAACAAGACTGTGTACATTCGCAAGTTATATGTAAGAagtgttttaaattatttgatgaagTTGACGAATTGGAGCATAGattgaatgaaattaaaacCGAATTGAATCAGAATTTTACGAATTCGAGAATGCGCCAGAATGGTGATAATTCAACTGGTCTTGATGAAGATATGAATGATTCCGGTAATATGGATAGAAAACCGAATACTGAAGCTAACAAAGAGAATGAATTACCACGAAAGATCCTGGATATACCATCATCTGATGAAGAAACAACTCCAACTGAGAAAGGCCAATTACAAACGATCGAAGATATTGAAATGGAATTGGTTAAGATGCATGGTGGTATAGagaatgttgaaaatattaaaacagaTAATGAGACGAGtcgtaataatttatcgaCATCATCGAATCAATTCCAAAATTTCACAACAACTAGTAGTGGTGCTAGTAGTAGTGTTGGTGTTGgtgaaattgttgattctGGTGCTGTTGATCATTCATCCGATTCCGATTATGAACCACCATCAAAAAATgagaaattcatcaaattagAACCGggcattaataataatgatagtttaTCAGCAATAGATCGTCCAAATATATTACGTAAAAAAACATCGCAAagtgatttaattaaaattaaagatgAACCATCGAATTCACAACCGATGGTAGCACGACAAGATTCAGTATTTACATGTTTATTATGTCAAAATAATGAAACCGTAGTGGCTGGTGATGCACGTGCTATAACATCGCATATGCGAAATGAACATGATGTACGTTTATATATTTGTGATGTTTGCGGACAAGATTTCCGTAAACGTAATGAATTATCAGCTCATTTAGATGAACATGTTGCGGCTGAAGAAGGCGATTTCCAATGTGAAGTATGCAATCGTATTTTTAGTAATTTACGTTTATTTCGTATACATCGCCGTATGCATTATCCACAAAACAAAGCATGGCCATGTGATACGTGCGGTAAAAAATATTCAAGTCGTAATTTATTAGAGGAACATATAAATACACATACAGGTGTACGTCCATATGTATGCCAGCAATGTGGTAAAGATTTCGCATCGAAATATACATTTCGGGCACATGAAAAAACACACGAAGTACGTCCACGACCATTTCAATGCAGTCAATGTTCGAAGACATTCTTAAGTCAACAGAATTTAGTACAACATGAACGTACACATACCGGTATTAAAGAGTTTAGTTGTCATTTGTGTGGTAAAAGTTTCGGTTCAGCTCATAATTTAGAAGTACATTCAATTGTACATACAGGCTATAAGCCATTCGTATGTGAAATATGTCATAAAGCATTTGCACGTAAAGCTGAAATACGCGATCATGAACGTACACATACTGGTGAACGTCCATACCAATGTGAAATGTGTGGTGCAACATTTTCACAACGTTCCAATTTACAATCACATAAACGTGCAACACATTTCGATGATAAACGTTATATATGTGTTGATTGTGGTAAAGGCTTTAAACGACGCCGTTTATTAGATTACCATATGAAAGCGGCACATACAGGCGAACGGCCATATAAATGTCATGTATGCGATGCAACATTTGTTTATCCTGAACATTTCAAGAAACATCGTCGTATACATACTGGTGAAAAACCGTTTTTATGCGAAGTATGCGGTAAAGCATTCAATAGTCGTGATAATCGTAATGCTCATCGATTTGTACATTCTGATAAAAAACCATATGAATGTCTAGTTTGTGGTGCTGGTTTTATGCGTAAACCATTATTATATCAACATATGCAAACGCAAGGACATTTAAATGatacaattgttgttaatcAGCCACGTTTGACAACTGACGATGATCAATTGGTAACTGTAAATTCACGTGGTGAAATGGAAATTGTCGATCCAATAGCATTAGCTGAAGCTGTtgatagtagtaataatgataatgatagtaaaacaataacagaagattcgaaattatatatatcGGAACATATATTATCGACAACATCACCGCATGACATTGACCATGAAGGACAAGATAATGAAAATGGTTTAGAAACAGTTgaacatattattatagatggaCAACAAATTACATTTGAAAATGATGAAGACGAAGTTGGTACAATAACTGGTGAGACATTAGCTGAAAGCGAAAcgcaaattattgaaacaccCGATGGGCCTGTACAATTAGTACGTGTCCGTATACCAAATGAACAAGGTGAAGAAGAAGAGGCATGGATTAAAATAGTAccagaataa
Protein Sequence
MSSNTLCLICNGSCASSRNSVQIFNKEIKLYSDVALVDVISKILETELQQDCVHSQVICKKCFKLFDEVDELEHRLNEIKTELNQNFTNSRMRQNGDNSTGLDEDMNDSGNMDRKPNTEANKENELPRKILDIPSSDEETTPTEKGQLQTIEDIEMELVKMHGGIENVENIKTDNETSRNNLSTSSNQFQNFTTTSSGASSSVGVGEIVDSGAVDHSSDSDYEPPSKNEKFIKLEPGINNNDSLSAIDRPNILRKKTSQSDLIKIKDEPSNSQPMVARQDSVFTCLLCQNNETVVAGDARAITSHMRNEHDVRLYICDVCGQDFRKRNELSAHLDEHVAAEEGDFQCEVCNRIFSNLRLFRIHRRMHYPQNKAWPCDTCGKKYSSRNLLEEHINTHTGVRPYVCQQCGKDFASKYTFRAHEKTHEVRPRPFQCSQCSKTFLSQQNLVQHERTHTGIKEFSCHLCGKSFGSAHNLEVHSIVHTGYKPFVCEICHKAFARKAEIRDHERTHTGERPYQCEMCGATFSQRSNLQSHKRATHFDDKRYICVDCGKGFKRRRLLDYHMKAAHTGERPYKCHVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQTQGHLNDTIVVNQPRLTTDDDQLVTVNSRGEMEIVDPIALAEAVDSSNNDNDSKTITEDSKLYISEHILSTTSPHDIDHEGQDNENGLETVEHIIIDGQQITFENDEDEVGTITGETLAESETQIIETPDGPVQLVRVRIPNEQGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00814562; iTF_00987308; iTF_00929768; iTF_01022409; iTF_01366508; iTF_00842037;
90% Identity
iTF_01366508;
80% Identity
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