Mdia006474.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Meloe dianella
Gene Symbol
SCRT1
Assembly
GCA_028455855.1
Location
JAPTHL010000079.1:302352-304970[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 3.9 2.4e+02 2.1 0.1 3 17 59 73 57 74 0.74
2 13 5.3e-05 0.0032 17.5 0.1 1 23 312 334 312 334 0.95
3 13 1.3e-05 0.00076 19.4 1.5 1 23 342 364 342 364 0.99
4 13 7e-06 0.00042 20.2 0.2 2 23 372 393 371 393 0.97
5 13 4.2e-06 0.00025 20.9 1.2 1 23 399 421 399 421 0.98
6 13 0.00011 0.0064 16.5 2.4 1 23 428 450 428 450 0.99
7 13 6.1e-06 0.00037 20.4 1.2 1 23 456 478 456 478 0.96
8 13 5.5e-06 0.00033 20.5 0.1 1 23 484 506 484 506 0.98
9 13 2.8e-07 1.7e-05 24.6 0.8 1 23 512 535 512 535 0.96
10 13 0.00027 0.016 15.2 0.3 1 23 541 564 541 564 0.94
11 13 2.9e-06 0.00018 21.4 2.4 1 23 570 592 570 592 0.99
12 13 9.9e-05 0.006 16.6 0.4 1 23 598 620 598 620 0.94
13 13 0.00065 0.039 14.0 0.1 1 23 626 650 626 650 0.94

Sequence Information

Coding Sequence
ATGTCGTCGAATACGTTATGCTTAATTTGCAATGGGAGTTGCGCGTCCAGTCGAAATTCCGTACAAATATTCAACAAAGAGATAAAATTATATTCAGATGTCGCTTTGGTTGATGTTATATCGAAAATATTAGATACTGAATTAAAGCAAGATCAAACACATTCGCATGTGATCTGTAAGAAATGTTTCAAATTATTTGATGAGGCTGATGAATTAGAACATCGTTTCAATGAGATCAAAACAGAATTAATAAATAATTTTACAAATTCGAAAATACGTCAGAATGGTGAGAATTTAACAAATTCAGATGATGAAATGAATGAATCGAATAATATTGAAATGAAACCAAATACTGACGCAAATAAAGAAAATGAATTACCACGTAAAATTCTTGATATACCATCATCCGATGAGGAAACATCAACACACGTTGAAAAAGGGCAATTACAAACAATTGAAGATATTGAAATGGAACTGGTAAAAATGCATGGTGGTATAGAACATGTGGATAATATTAAAACATGTAATGATACAACAACAACAATAACACCAAATCAAACATTTGAAGGTTTCACAAAGAATAGTGGTGAAATTATTGATTCTGGTGCTGTTGATCATTCATCAGATTCCGATTATGAACCACCAATAACAACAAAAAGTGATAGATTAATAAAATCAGAACCAGGTAGTGGTGGCAATAATAATACTAATAACAATGATAGTTTATTGGATCGTCCAAATATTTTACGTAAAAAATCATTACAAAATGATTTAATAAAAATCAAAGATGAACCATCATCAGCTAATTTACAACCAATGGTAGCACGTCAAGATTCTGTATTTACATGTTTAATATGTCAAGATAGTGAAACGGTAGCTGGTGATGCACGTTCAATTACATCACATATGAGGAATGTACATGAGGTACGTTTGTATATATGTGATGTATGTGGACAAGATTTCCGTAGACGTAATGAATTGTCAGCACATTTAGATGAGCATGTTGCAGCGGAAGAAGGTGATTTCCAATGTGAAGTATGCAATCGTATATTTAGTAATTTACGTTTATTTCGTATACATCGACGTATGCATTATCCACAAAATAAAGCATGGCCATGCGAGACATGCGGTAAGAAATATTCCAGTCGTAATTTATTAGAAGAACATATAAATACACATACAGGTGTACGTCCAtatgtatgtcaacaatgtggtaaagattttgcatccaaatatacatttcgtgcacatgagaaaacacatgaagtacgtccacgtccatttcaatgtaatcaatgttcgaaaacatttttaagtcaacagaatttattacaacatgaacgtacacataccggtattaaagaatatagttgtcatttgtgtggcaaaagttttggttcagcacataatttagaagtacattcaattgtacatactggctataaaccatttgtatgtgaaatatgtaataaagcatttgcacgtaaagcagagatacgtgatcatgaacgtacgcatactggtgaacggccatatcaatgtgagatgtgtggtgcaacattttcacaacgttcaaatttacaatcgcataaacgtgcaacacatttcgatgataaacgttatgtatgtattgattgtggtaaaggttttaaaaggagacgattattagattatcatatgaaagctgcacatactggtgaacgtccatataaatgcaatgtatgcgatgcaacattcgtttatcctgaacattttaaaaaacatcgtcgcatacataccggtgaaaaaccatttttatgtgaagtctgtggtaaagcatttaatagtcgtgataatcgcaatgcacatcgttttgtacattctgataagaaaccatatgaatgtttggtatgtggtgctggttttatgcgtaaaccattattatatcaacatatgcaaacacaAGGACATTTAAATGATACAATTGTTGTGAATCAACCACGTTTAACAACTGATGATGATCAATTAGTTACAGTTAATGCACGTGGTGAAATGGAAATTGTTGATCCAATTGCATTAGCTGAAGCtgttgataatagtaataatgacaatgataataatacaatgccggaagattcgaaattatatatatcagaacatatattatcaacaacatcaccacatggacatgcaattcatgatgatgatgatgataataataatgaagatgatgatgatgatgatgatgatgatggagtacaagacaatgaaactggtggattagaaacagttgaacatatcattattgatggacaacagattagttttgaaaatgatgatgatgaagttggtacaataactggtgaAACATTAGCTGAAAGTGAAACGCAAATTATTGAAACACCTGATGGGCCTGTACAGTTAGTACGTGTTAGAATACCAAATGAACAAGGCGAAGAAGAAGAAGCATGGATTAAAATTGTACCAGAATAA
Protein Sequence
MSSNTLCLICNGSCASSRNSVQIFNKEIKLYSDVALVDVISKILDTELKQDQTHSHVICKKCFKLFDEADELEHRFNEIKTELINNFTNSKIRQNGENLTNSDDEMNESNNIEMKPNTDANKENELPRKILDIPSSDEETSTHVEKGQLQTIEDIEMELVKMHGGIEHVDNIKTCNDTTTTITPNQTFEGFTKNSGEIIDSGAVDHSSDSDYEPPITTKSDRLIKSEPGSGGNNNTNNNDSLLDRPNILRKKSLQNDLIKIKDEPSSANLQPMVARQDSVFTCLICQDSETVAGDARSITSHMRNVHEVRLYICDVCGQDFRRRNELSAHLDEHVAAEEGDFQCEVCNRIFSNLRLFRIHRRMHYPQNKAWPCETCGKKYSSRNLLEEHINTHTGVRPYVCQQCGKDFASKYTFRAHEKTHEVRPRPFQCNQCSKTFLSQQNLLQHERTHTGIKEYSCHLCGKSFGSAHNLEVHSIVHTGYKPFVCEICNKAFARKAEIRDHERTHTGERPYQCEMCGATFSQRSNLQSHKRATHFDDKRYVCIDCGKGFKRRRLLDYHMKAAHTGERPYKCNVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQTQGHLNDTIVVNQPRLTTDDDQLVTVNARGEMEIVDPIALAEAVDNSNNDNDNNTMPEDSKLYISEHILSTTSPHGHAIHDDDDDNNNEDDDDDDDDDGVQDNETGGLETVEHIIIDGQQISFENDDDEVGTITGETLAESETQIIETPDGPVQLVRVRIPNEQGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01566427;
90% Identity
-
80% Identity
-