Scau008856.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenodera caucasica
Gene Symbol
SCRT1
Assembly
GCA_037414795.1
Location
JAZBGZ010001434.1:7120-9663[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 9.8 5.8e+02 1.0 0.1 3 10 59 66 57 74 0.62
2 13 0.00021 0.012 15.7 0.1 1 23 311 333 311 333 0.95
3 13 1.3e-05 0.0008 19.4 1.5 1 23 341 363 341 363 0.99
4 13 7.5e-06 0.00044 20.2 0.2 2 23 371 392 370 392 0.97
5 13 4.5e-06 0.00026 20.9 1.2 1 23 398 420 398 420 0.98
6 13 0.00014 0.0085 16.2 2.0 1 23 427 449 427 449 0.99
7 13 9.2e-06 0.00055 20.0 1.3 1 23 455 477 455 477 0.96
8 13 5.8e-06 0.00035 20.6 0.1 1 23 483 505 483 505 0.98
9 13 2.9e-07 1.7e-05 24.7 0.8 1 23 511 534 511 534 0.96
10 13 2e-05 0.0012 18.9 0.3 1 23 540 563 540 563 0.96
11 13 3.1e-06 0.00018 21.4 2.4 1 23 569 591 569 591 0.99
12 13 0.0001 0.0062 16.6 0.4 1 23 597 619 597 619 0.94
13 13 0.00068 0.041 14.1 0.1 1 23 625 649 625 649 0.94

Sequence Information

Coding Sequence
atGTCGTCGAATACGTTATGCTTAATTTGCAATGGGAGTTGCGCGTCCAGTCGAAATTCTgtacaaatattcaacaaagaGataaaattatattcagaTGTCGCTCTAGTTGATGTAATATCGAAGATTTTAGAAACTGATTTACAACAAGATTCTGTACATTCACAGGTTATATGTAAGAAATGCTTCAAATTGTTCGATGAAGTCGACGAATTAGAACATagattgaatgaaattaaaactgagttaatcaataatttcacaaattcgAAAATGCGTCAAAATGGTGAAAATATAACCGACATGGATGACGATATGAATGAGACGAGTATCGATAGAAAACCGAATATTGAAGCTAACAAAGAGAATGAATTGCCGCGTAAAATTCTCGATATCCCATCATCTGATGAGGAGACAACTCAAACAGAAAAAGGAcaattacaaacaattgaagatattGAAATGGAATTGGTTAAAATGCACGGTGGTCTAGAGAACGTTGATAATGTTAAAACCGATGTTGATACAAGTCGTGGTAATTTGTCAACATCAacgaatcaatttcaaaatttcaccaCAACTAGTAGTGGTGCTAGTAGTAGTGTTGGTGTtggtgaaattgttgattctgGTGCTGTCGATCATTCGTCCGATTCTGATTATGAACCACCAAccaaaaatgagaaattaatcaaattagaacCGGGCAGTGATGGTCTATCAATAGATCGTCCGAATATTTTACGTAAAAAATCATTACAACATCCAAacgatttgattaaaatcaaagATGAACCATCAAATTCACAACCAATGGTGGCACGACAAGACTCGTTATTCACATGTTTATTATGTCAGGGTAATGAAACAGTAGCTGGAGATGCTCGTGCTATTACATCCCATATGAAAAACGCCCACGATTGTCGTTTATATATTTGTGATGTTTGCGGTCAAGATTTTCGTAAACGTAACGAATTATCGGCGCATTTAGACGAACACGTTGCCGCCGAAGAAGGTGATTTTCAATGTGAAGTTTGTAATCGTATATTCAGCAATTTACGCTTATTTCGCATACATCGTCGAATGCATTATCCACAAAATAAAGCATGGCCATGCGATACATGCGGTAAAAAATACTCAAGTCgtaatttattagaagaaCATATAAATACACATACCGGTGTACGTCCGTATGTATGTCAGCAATGTGGTAAAGATTTCGCATCGAAATATACGTTTCGAGCTCATGAAAAAACGCATGAAGTACGTCCAAGACCGTTTCAATGTAGTCAATGTTCGAAAACATTTTTAAGTCAACAAAATCTAGTACAACACGAACGGACACATACCGGTATTAAAGAGTTCAGTTGTCATTTATGCGGTAAAAGTTTCGGTTCGGCACATAATTTAGAAGTACATTCAATTGTCCATACGGGCTATAAACCGTTTGTTTGTGAAATATGCAATAAGGCATTTGCACGTAAAGCTGAAATACGCGATCATGAACGCACCCATACCGGTGAACGTCCGTATCAATGTGAAATGTGTGGTGCTACATTTTCACAACGTTCCAATTTACAATCACATAAACGTGCCACCCATTTCGATGATAAACGTTATATTTGTGTTGATTGTGGTAAAGGTTTCAAACGACGTCGTCTATTAGATTATCATATGAAAGCGGCCCATACAGGCGAACGTCCGTATAAATGTAATGTATGCGATGCTACGTTTGTTTATCCGGAACATTTCAAGAAACATCGCCGTATCCATACCGGCGAAAAACCGTTTTTATGTGAAGTATGCGGTAAAGCTTTCAATAGTCGCGATAATCGTAATGCTCATCGATTTGTACATTCGGATAAAAAACCGTATGAATGCTTAGTATGTGGAGCTGGTTTTATGCGAAAACCACTATTATATCAACATATGCAAACTCAAGGACATTTAAATGATACAATTGTTGTGAATCAACCACGTTTAACAACTGATGATGATCAATTAGTTACCGTAAATTCACGTGGTGAAATGGAAATAGTCGATCCGATAGCATTAGCTGAAGCTGTTGATAATAgcaacaatgataatgatactAAAACAATGACAGaagattcgaaattatatatATCTGAACATATATTATCGACAACATCATCTAGTGATATTGGACAAGATCAACAAGATGAGAATGGTTTAGAAACAGTTGAACATATCATCATTGATGGACAACAAATAACATTTGAGAATGATGACGATGAAGTTGGTACAATAACAGGTGAAACATTGGCCGATAGTGAAAcccaaattattgaaacaccAGATGGGCCTGTTCAACTAGTACGTGTTCGAATACCCAACGAACAAGGCGAAGAAGAGGAAGCCTGGATCAAAATCGTACCAGAATAA
Protein Sequence
MSSNTLCLICNGSCASSRNSVQIFNKEIKLYSDVALVDVISKILETDLQQDSVHSQVICKKCFKLFDEVDELEHRLNEIKTELINNFTNSKMRQNGENITDMDDDMNETSIDRKPNIEANKENELPRKILDIPSSDEETTQTEKGQLQTIEDIEMELVKMHGGLENVDNVKTDVDTSRGNLSTSTNQFQNFTTTSSGASSSVGVGEIVDSGAVDHSSDSDYEPPTKNEKLIKLEPGSDGLSIDRPNILRKKSLQHPNDLIKIKDEPSNSQPMVARQDSLFTCLLCQGNETVAGDARAITSHMKNAHDCRLYICDVCGQDFRKRNELSAHLDEHVAAEEGDFQCEVCNRIFSNLRLFRIHRRMHYPQNKAWPCDTCGKKYSSRNLLEEHINTHTGVRPYVCQQCGKDFASKYTFRAHEKTHEVRPRPFQCSQCSKTFLSQQNLVQHERTHTGIKEFSCHLCGKSFGSAHNLEVHSIVHTGYKPFVCEICNKAFARKAEIRDHERTHTGERPYQCEMCGATFSQRSNLQSHKRATHFDDKRYICVDCGKGFKRRRLLDYHMKAAHTGERPYKCNVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQTQGHLNDTIVVNQPRLTTDDDQLVTVNSRGEMEIVDPIALAEAVDNSNNDNDTKTMTEDSKLYISEHILSTTSSSDIGQDQQDENGLETVEHIIIDGQQITFENDDDEVGTITGETLADSETQIIETPDGPVQLVRVRIPNEQGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01566427;
90% Identity
iTF_01566427;
80% Identity
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