Basic Information

Insect: Iselma pallidipennis
Gene Symbol: SCRT1
Assembly: GCA_037464855.1
Location: JAZBHA010001006.1:12904-16473[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00027 0.012 15.8 0.1 1 23 277 299 277 299 0.95

2 12 1.7e-05 0.00075 19.5 1.5 1 23 307 329 307 329 0.99

3 12 9.6e-06 0.00042 20.3 0.2 2 23 337 358 336 358 0.97

4 12 5.7e-06 0.00025 21.0 1.2 1 23 364 386 364 386 0.98

5 12 7.3e-05 0.0032 17.5 2.1 1 23 393 415 393 415 0.99

6 12 1.2e-05 0.00051 20.0 1.3 1 23 421 443 421 443 0.96

7 12 7.5e-06 0.00033 20.6 0.1 1 23 449 471 449 471 0.98

8 12 3.8e-07 1.6e-05 24.7 0.8 1 23 477 500 477 500 0.96

9 12 1.4e-05 0.00063 19.7 0.3 1 23 506 529 506 529 0.96

10 12 5.8e-06 0.00025 21.0 2.4 1 23 535 557 535 557 0.99

11 12 0.00013 0.0058 16.7 0.4 1 23 563 585 563 585 0.94

12 12 0.00088 0.038 14.1 0.1 1 23 591 615 591 615 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00027	0.012	15.8	0.1	1	23	277	299	277	299	0.95
2	12	1.7e-05	0.00075	19.5	1.5	1	23	307	329	307	329	0.99
3	12	9.6e-06	0.00042	20.3	0.2	2	23	337	358	336	358	0.97
4	12	5.7e-06	0.00025	21.0	1.2	1	23	364	386	364	386	0.98
5	12	7.3e-05	0.0032	17.5	2.1	1	23	393	415	393	415	0.99
6	12	1.2e-05	0.00051	20.0	1.3	1	23	421	443	421	443	0.96
7	12	7.5e-06	0.00033	20.6	0.1	1	23	449	471	449	471	0.98
8	12	3.8e-07	1.6e-05	24.7	0.8	1	23	477	500	477	500	0.96
9	12	1.4e-05	0.00063	19.7	0.3	1	23	506	529	506	529	0.96
10	12	5.8e-06	0.00025	21.0	2.4	1	23	535	557	535	557	0.99
11	12	0.00013	0.0058	16.7	0.4	1	23	563	585	563	585	0.94
12	12	0.00088	0.038	14.1	0.1	1	23	591	615	591	615	0.94

Sequence Information

Coding Sequence: ATGTCGTCGAATACTACGTTATGCTTAATTTGCAATGGCAGTTGCGCGTCCACTCGAAATTCCGtacaaatattcaacaaagagaTCAAATTATGTTCAGATGTTGCTCTAGTTGATGTGATCtcgaaatatttacaaactgAATTGCAACAGGATGCCGTACATTCACAAGTTATCTGTaagaaatgttttaaattattggatGAAGCTGATGAATTAGAACATCGATTAAAAGATATTAAAACTGATTTAATGCATAATTTTTCAACTGCAAAAACGGAAAAGACGCAACTGCAAACCATTGAAGATATCGAAATGGAATTGGTAAAAATGCATGGTGGTATAGAAGAGCatgttgaaaatgttaaaacagatgatggtggtaatgtatcatcatcatcatcaacaacaaatcaaacatttaaaaatttcacaacaacTGGCAGtagcagtggtggtggtggtggtgatggtagtggtggtgaaaTAATTGATGCTGGTGCAGTTGATCATTCATCTGATTCCGATTatgaaccaccaccaacaacaacaacaacaaaaaatgatggtAAAATAAAACTGGAACCAGGTAGTGGTAATGATAGTTTATCATCAATAGATCGTCCGAATATTTTACgtaaaaaatcattacaaaatacaaatgatttaataaaagtgaaaGATGAACCATCATCGATGAGTTCACAACCAATGGTAGCACGTCAGGATTCTGTATTTACATGTTTATTATGTCAAGGTGATGAAACAGTGGCTGGTGATGCACGTACGATAACAGCACATATGAAGAATGTCCATGAAGTACGTTTGTACATATGTGATGTATGTGGACAAGATTTTCGTAAACGGAATGAGTTATCGGCACATTTAGATGAGCATGTAGCAGCTGAAGAGGGTGATTTCCAATGTGAAGTATGTAATCGTATATTTAGTAATTTACGTTTATTCCGCATACATCGTCGTATGCATTATCCACAAAATAAAGCATGGCCATGTGATACGTGCGGTAAAAAATACTCAAGTCgtaatttattagaagaaCATATAAATACACATACTGGTATACGACCATATGTATGCCAACAATGTGGTAAAGATTTTGCATCAAAATATACATTTCGTGCACATGAAAAAACACACGAAATACGACCGCGACCATTTCAATGTAATCAATGTTCAAAAACATTTCTAAGTCAACAAAATCTAATCCAACATGAACGCACCCATACTGGTATAAAAGAATTCAGTTGCCATCTATGTGGTAAAAGTTTTGGTTCTGCACATAATTTAGAAGTACATTCAATTGTACATACCGGTTATAAACCGTTTGTATGTGAAATCTGTAATAAAGCATTTGCACGTAAAGCTGAGATACGTGATCATGAACgtacacatactggtgaacgTCCATATCAATGTGAAATGTGTGGTGCAACATTTTCACAACGTTCCAATTTACAATCACACAAACGCGCCACACATTTAGATGATAAACGTTATGTATGTGTTGATTGTGGTAAAGGTTTTAAAAGACGTCGTCTATTAGACTATCATATGAAGGCTGCACATACTGGTGAACGTCCATATAAATGTAGTGTATGCGATGCAACATTTGTCTATCCTGAGCATTTTAAGAAACATCGTCGTATACACACTGGCGAGAAGCCGTTTTTATGTGAAGTATGTGGTAAAGCATTTAATAGTCGTGATAATCGTAATGCACATCGTTTCGTGCATTCCGATAAAAAACCATATGAATGTTTGGTATGTGGTGCTGGTTTTATGCGTAAACCATTATTATATCAACATATGCAAACACAGGGACATTTAAATGATACGATTGTTGTTAATCAACCACGTTTAACAACCGATGATGATCAATTAGTTACTGTTAATTCACGTGGCgaaatggaaattgttgatCCAATTGCATTAGCTGAAGCTgttgataatagtaataatgataatgataatgagaaTGAGAATAATACAATGACAGAAGAttctaaattatatatatCTGAAcatatattatcaacaacatcaccaacaacGGTGGATGGACAAGATGGACAAGATAATGAAGGTGGTTTAGAGACCGTTgaacatattattattgatggacAACAGATTAgttttgaaaatgatgatgatgaaatggGGACAATAACTGGTGAAACACTAGCTGAAAGTGaaacacaaattattgaaacaccAGATGGACCTGTACAATTAGTACGTGTTAGGATACCAAATGAACAGggtgaagaagaagaagccTGGATTAAAATTGTACcagaataa
Protein Sequence: MSSNTTLCLICNGSCASTRNSVQIFNKEIKLCSDVALVDVISKYLQTELQQDAVHSQVICKKCFKLLDEADELEHRLKDIKTDLMHNFSTAKTEKTQLQTIEDIEMELVKMHGGIEEHVENVKTDDGGNVSSSSSTTNQTFKNFTTTGSSSGGGGGDGSGGEIIDAGAVDHSSDSDYEPPPTTTTTKNDGKIKLEPGSGNDSLSSIDRPNILRKKSLQNTNDLIKVKDEPSSMSSQPMVARQDSVFTCLLCQGDETVAGDARTITAHMKNVHEVRLYICDVCGQDFRKRNELSAHLDEHVAAEEGDFQCEVCNRIFSNLRLFRIHRRMHYPQNKAWPCDTCGKKYSSRNLLEEHINTHTGIRPYVCQQCGKDFASKYTFRAHEKTHEIRPRPFQCNQCSKTFLSQQNLIQHERTHTGIKEFSCHLCGKSFGSAHNLEVHSIVHTGYKPFVCEICNKAFARKAEIRDHERTHTGERPYQCEMCGATFSQRSNLQSHKRATHLDDKRYVCVDCGKGFKRRRLLDYHMKAAHTGERPYKCSVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQTQGHLNDTIVVNQPRLTTDDDQLVTVNSRGEMEIVDPIALAEAVDNSNNDNDNENENNTMTEDSKLYISEHILSTTSPTTVDGQDGQDNEGGLETVEHIIIDGQQISFENDDDEMGTITGETLAESETQIIETPDGPVQLVRVRIPNEQGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01566427;
90% Identity: -
80% Identity: -