Zcuc016956.1
Basic Information
- Insect
- Zeugodacus cucurbitae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_028554725.2
- Location
- CM053022.1:18357502-18364759[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.35 1.4e+04 -3.9 0.3 146 159 31 44 18 61 0.40 2 3 2e-116 7.9e-112 374.5 30.8 1 299 279 573 279 574 0.92 3 3 0.21 8.2e+03 -3.2 5.5 7 28 606 629 580 647 0.48
Sequence Information
- Coding Sequence
- ATGTCAGATGCTCTAAACAATAACGACCTGTCCCGTGTTGGTGATTGTacgaaaaattatgataaatgcATTGCCACAGATTCTTCTAATAAGGagacacaacaaaacaacaacgattgtgaattaaataaaaagtacacAACAAGTATTAGTACGAATAGTAATGATGAACTCATCGAGGAGGGATTCGACTATTGCGAAGCCGACCTGTTAGACGAGTTAAACGCTAGCGACGGCGACGCCGACGACGATGACGGCGGCATAGCAAACGACGACGTTGACGACAATGTCGAAAGAAATGCGaacattcaaaaatataacACTCATCATCTTCCCAACACACAAGTTGCGGACAAGAAGGGTGAAGTTGGAGAACGTGCAAATATTACCGGTACATTTTCTCTTAATGACCAAATAAGCGACACACATGCTCATGACATTAACACAAGATCGTCGAATGTTGCGAGCGTCGTCGACAGTGATTGTGTGCCAATTGTGAGCACTGATAATGCGCCAACCAATGCAAGTGATAAGCAAAAACTTACACCGACTAACTTAGTGTTGAGTGCCGACAACGACGATCCAACTGCGCGAGTAGATGGCGTTGATTCATACTGTCCCATAACACCACGCCGTATTGTTGATGTTGAAGCAGAGCCTAATCCATTGTTAAAATGTAGTTCCACAGCACGCATAGAAAGCAATAATGaaaatgttgttgatgatgCCGCAGTTGTTGGCAATAACAATGATCATGGTGATGAAGGTTATTATTATTCTGATGAGCCCGAAGATGAATTAATTGTACAGTTCCTGGGAGAAGCCAATCGTATtGCCGAGGCCCGTTTGGCTGCTCGCCGACAAGCGCGCGCTGAAGCACGTGAAATACGAATGCGAGAGTTGGAACGCCAACAAAAGGAGCAAGAGCAAAATGCAGATCGTGTTTTTGACATGCACACCTCGAGCGGCATCGACCCGTTATCGCGGTCACGGCTCGCAACCGGCGTCGGCAGCTCACCACTGGGCGCAGTGCTCAACAGCACACGAGCCAACTCAATGTCATCACGACGCAGCAGTGAAGATTCACTGGAAGAAGAAGGGCGCAGTCTGCGCGATATACGACATGAGCTCAAGGACGTCGAGGAGAGATTTCGTAAGGCCATGATAGCCAATGCACAGTTGGATAACGAACGAGCTTCGCAAACGTATCAAATACAACTGTTGAAGGATAAACTAGAAGAGGTGGAGGAATCTTATGCCCAGCTACAACGTGAATTTAAGGATAAGTCACGTGATTGCAATGCGCTAAAAAGGAATCTGGATAAATTAAGTGAAGAACTTAAATTGGTGCAAGGTCAACTAACTGAACGGGATAAACTAATCGCCGATCAGGGCTTAGTTATTGTGGCCGTAGAGAATGAAGAGGGTACCGATGCAAAACGTGCTCTAGTCAGTGTGGAAAATGCTCAGCTGTTAGGTTCAGTGCAAGGCTCATTAGATGTGCGACTGAAAAAGTTCAGCGAGGAGAAACAACAACTTTTAGCAGAAGTGCAAAAGCTGCAGGAGACATTAGAAAATTACAAGAGCCAAGGCAAGGGGCGTTCCAATTCGCTTAACGGACCATCAGGTTCTGACGAGGACTATGAAGCGCAAAgaGAGGCGAATAAAATAATATCGGACTACAAGTATAAACTGCAAAAGGCTGAACAAGAAATCGCCAGTTTACAAGCGAGCTTGGCACGTTCAGAAACGCAAGTTATACGTTATAAAAGCACAGCGGAAGCGGCAGAAAAGGCTGAAGCTGAACTCAAAATCGAACGGAGAAAGCTACAAAGAGAAAATCGCGAGGCCATGGAACGTATGGAGGAATTGGAAACTTCAAATAATCACCTGCTGAAGCGCCTAGACAAACTAAAGAATGCTAAAAGCGCATTGCTTAAGGATCTCTGA
- Protein Sequence
- MSDALNNNDLSRVGDCTKNYDKCIATDSSNKETQQNNNDCELNKKYTTSISTNSNDELIEEGFDYCEADLLDELNASDGDADDDDGGIANDDVDDNVERNANIQKYNTHHLPNTQVADKKGEVGERANITGTFSLNDQISDTHAHDINTRSSNVASVVDSDCVPIVSTDNAPTNASDKQKLTPTNLVLSADNDDPTARVDGVDSYCPITPRRIVDVEAEPNPLLKCSSTARIESNNENVVDDAAVVGNNNDHGDEGYYYSDEPEDELIVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHTSSGIDPLSRSRLATGVGSSPLGAVLNSTRANSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQTYQIQLLKDKLEEVEESYAQLQREFKDKSRDCNALKRNLDKLSEELKLVQGQLTERDKLIADQGLVIVAVENEEGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLLAEVQKLQETLENYKSQGKGRSNSLNGPSGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERMEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00192086;
- 90% Identity
- iTF_01563773;
- 80% Identity
- -