Zcuc012976.1
Basic Information
- Insect
- Zeugodacus cucurbitae
- Gene Symbol
- Unr
- Assembly
- GCA_028554725.2
- Location
- CM053021.1:35270883-35282337[-]
Transcription Factor Domain
- TF Family
- CSD
- Domain
- CSD domain
- PFAM
- PF00313
- TF Group
- Beta-Scaffold Factors
- Description
- In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 7.1e-16 6.9e-12 46.1 0.0 2 65 132 194 131 195 0.95 2 9 0.00025 2.4 9.1 0.0 15 58 230 273 222 281 0.78 3 9 1.5e-18 1.5e-14 54.7 0.1 2 65 291 350 290 351 0.97 4 9 0.72 7e+03 -1.9 0.0 40 55 415 432 409 442 0.70 5 9 2.6e-12 2.5e-08 34.7 0.1 2 56 456 507 455 517 0.94 6 9 0.034 3.2e+02 2.3 0.0 44 65 587 610 585 611 0.86 7 9 1.7e-12 1.6e-08 35.3 0.0 3 54 724 772 722 787 0.88 8 9 0.058 5.6e+02 1.6 0.0 39 53 853 867 844 878 0.77 9 9 1.6e-14 1.6e-10 41.8 0.4 3 65 883 945 881 946 0.88
Sequence Information
- Coding Sequence
- ATGAATGCCCAATCAAAAGGTTACCGCACCGGTGaagaaatctaCGATAACATTTCCTGTGATGGCTTTTTCAACATGAATGCCATGCGTATTCAAACTACTTTTCCGCCAATTGGCACTTTTACTTTGGATTCTACGCTGGGTCCGCCACCGGCTCAATCGCAAACTCAACCACCGATATCCCAGCATCCTCCACAAATTGGGATTTTCGACGCTAATGAGGTTCCGGAGATCATTCAAAATCCGGCAACAATCGGTGTATTCCAATCCAATAGTGTTTTGAGCAATGGTGGAGGTAGTGGTGGTGGGGGCGGTAATAACTCCTCATCAATATTTAGTTCGCAATCGAGCTCTTCGTCAGCTGCCAACGATCCAAGTCAAGCAACTCGTGAGACTGGAATTATTGAGAAACTTTTGCATTCTTACGGATTCATTCAATGTTGCGAGCGTCAGGCGCGATTATTCTTTCACTTCTCGCAATTCAGCGGTAATATTGACCACTTAAAAATTGGTGATCCTGTCGAATTTGAAATGACCTACGACCGTCGGACAGGCAAGCCCATAGCAAGCCAAGTATCGAAGATAGCTCCAGAAGTGGTGTTATCAGAAGAACGTGTTACTGGCACTGTTACAACAGAACTTCGTACTGATTGCGCTAACAATTTACTTTCGTCGAACGAGACCACAGGACGCATCAGCTATGAAAACCGTGGCGAGTGCTTTTTCTTGCCATATACCAAAGATGATGTTGAGGGAAATGTCAATTTACGTGCCGGCGATAAAGTCAGTTTTCAAATTGCAACTAACCAAAGAGGTAACCTTGGTGCTTGCCACATCCGTTTGGAGAATCCAGCGCAGCCTGTTAAGTATCGTGGTGTTGTATGCTCCATGAAAGAATCCTTTGGATTTATTGAACGTGCTGATGTCGTCAAAgaaattttcttccatttttctGAAGCCGAGGGAAACGTTGAGCTACGCCCAGGCGACGATGTTGAATTTACCATACAAACTCGTAATGGTCGAGAGTTTGCTTGCAATATTACAAGATTGCCCCCAGGATCCGTTATTTTTGAGGACGTTGATACCACGATCTACAAAGGGCAGGTGTTGAAGCCTCTTGACCGTAATAATCCAACCCGACAAACTAATGACCCATTGCCCGGTCGTATACGGTATCGAGCACCGGACTATTCGGAAGTGGAAGTACCCTTTGGGGACAAAGATCAGAAGGGTGACTTCACTTTGCGCCATGGTGATTGGGTTCAATTTTTACTTGCCACTGATAGGCGTGATCAATTGCAGCGTGCAACTTCGATTTCTTTACTCGATGAGAcctttaaggtttctggtgagAAGCGTGAGCAAGGTGTAGTTGCCTCACTTAAGGACGGGTTTGGCTTTTTACGTTGCGTTGAACGCAATTTACGTTTATTTTTCCACTTTACGGAGGTGTTGGATACGagTCGGGAAATTGCTGTAAATGACGAAGTTGAATTTACCGTCGTTCAGGAGCCCGGTGTTCCATACAACACATCCCGTTTGCATGCAATTCGCATAAAGCACTTGCCACCAAACACAGTGCAATTTGAGATGCTAATGGCAAGTAATATTGAAGGTTCTGTAACGCGTGAGGCGCCTAAAAGTCCAATCAAATCCCAAGATCGCGTTGAGGGCGGTGTGATCACGTATGATCACGGTGATGTCAAAAAGACTATAATGTATTTCCTTAAAGACTGCGAGAAACCACCAAGAATTGGAGATCGTGTACGATTCGATATCTACTTGGTAAAACGAAACAAAGAATTCATTGCTGTAAATGTACAACTAATTGGACAGATGCAACAAATTCAtcagcaacaattgcaacaacaacaacaacaaccacaacataTGTTAACCAATACAACGAACCAACTGCAACATCAACATATGCACAACCAAAACAATGAGCAAATGCTACTGTCCAATGGTGTCGGCGTTGGTCTCAATACCGGCATTGGTGTTAACGTTGGCATCGCAGGTAACACCGGTGGCATGTTGCCCCCACCACAGAACGGATATTTACCACTGACTAATACAACTCAGCTGCTATCCACACCAAAGATTGAAGACTTCAAATTGGACAATAATAACTTAGCAATGAACGAACATGGGCAAACTTACCGTGGCTTTATTGCTGTCATCAAAGAGAATTTTGGGTTTATCGAGACTCTTTCGCATGATGAAGAAGTCTTTTTTCACTTTAGCAATTATGTTGGCAACCCGAACTGGTTGGAATTGGGTCAGGAGGTGGAGTATACTCTTTCACCGAATGGCAATACTTCCGCCTCTGGAAACTGCTTGCCGGCCGAAAATGTGCGCACACTACCAAAGGGTTCCATTCCACAGCCAGTCATTTTGGATGGAACTCACAATGGAATAGTAGCTCGTCCACTGCGTTGTATCAATCCCGATCAACAGGAATATGCTGGACTTATAGAGGTGTTGGATGAAACTAAACAAAGTGTTTTGACACAGCACGAATTCGGAATTACCAGTTTGGTAAATAAGCGTGATTTGTTACAGAAAGGTGACTTGGTCACTTTCAAGATCGACGAAATCGGACGCGCTGCGGAAATAAATGCTGTACGCCAAAAGAAACGTGCAACTGTTGATTCAATTAAAGGACAATTCGGTTTTCTCAATTACGAGATCGAGGATGGCAAAAAGCTCTTCTTTCACATGTCAGAGGTGCAAGGTAATGCAGTTGCTCTGCATCCAGGCGATACGGTTGAATTTTCGGTGGTCACCAATCagCGCAATGGCAAATCTTCAGCTTGCAATGTAGTGAAGATTAACGATCGTCCGGACCGCTTGATATCCCGCTTAAAGCTAAATGCTGACGATACTGTGCCACGATTAATCATCACTCGCGCACCACGCGGACCACAGAGCAAGGGTTTCTTGCCTCAAGCACGTATTGCACGCATTCCAGGGCCAATGGCTTTGGAGGACTTGGTCTTCCTGATGACCTCATGA
- Protein Sequence
- MNAQSKGYRTGEEIYDNISCDGFFNMNAMRIQTTFPPIGTFTLDSTLGPPPAQSQTQPPISQHPPQIGIFDANEVPEIIQNPATIGVFQSNSVLSNGGGSGGGGGNNSSSIFSSQSSSSSAANDPSQATRETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAPEVVLSEERVTGTVTTELRTDCANNLLSSNETTGRISYENRGECFFLPYTKDDVEGNVNLRAGDKVSFQIATNQRGNLGACHIRLENPAQPVKYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVELRPGDDVEFTIQTRNGREFACNITRLPPGSVIFEDVDTTIYKGQVLKPLDRNNPTRQTNDPLPGRIRYRAPDYSEVEVPFGDKDQKGDFTLRHGDWVQFLLATDRRDQLQRATSISLLDETFKVSGEKREQGVVASLKDGFGFLRCVERNLRLFFHFTEVLDTSREIAVNDEVEFTVVQEPGVPYNTSRLHAIRIKHLPPNTVQFEMLMASNIEGSVTREAPKSPIKSQDRVEGGVITYDHGDVKKTIMYFLKDCEKPPRIGDRVRFDIYLVKRNKEFIAVNVQLIGQMQQIHQQQLQQQQQQPQHMLTNTTNQLQHQHMHNQNNEQMLLSNGVGVGLNTGIGVNVGIAGNTGGMLPPPQNGYLPLTNTTQLLSTPKIEDFKLDNNNLAMNEHGQTYRGFIAVIKENFGFIETLSHDEEVFFHFSNYVGNPNWLELGQEVEYTLSPNGNTSASGNCLPAENVRTLPKGSIPQPVILDGTHNGIVARPLRCINPDQQEYAGLIEVLDETKQSVLTQHEFGITSLVNKRDLLQKGDLVTFKIDEIGRAAEINAVRQKKRATVDSIKGQFGFLNYEIEDGKKLFFHMSEVQGNAVALHPGDTVEFSVVTNQRNGKSSACNVVKINDRPDRLISRLKLNADDTVPRLIITRAPRGPQSKGFLPQARIARIPGPMALEDLVFLMTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258627; iTF_01404584; iTF_01022762; iTF_00081903; iTF_00082692; iTF_00313208;
- 90% Identity
- iTF_00081903;
- 80% Identity
- -