Alud019764.1
Basic Information
- Insect
- Anastrepha ludens
- Gene Symbol
- Unr
- Assembly
- GCA_028408465.1
- Location
- JAPVRI010085950.1:8205-14981[-]
Transcription Factor Domain
- TF Family
- CSD
- Domain
- CSD domain
- PFAM
- PF00313
- TF Group
- Beta-Scaffold Factors
- Description
- In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.4e-15 8.7e-12 46.2 0.0 2 65 105 167 104 168 0.95 2 9 0.00049 3.1 9.2 0.0 15 58 203 246 195 254 0.77 3 9 3e-18 1.9e-14 54.7 0.1 2 65 264 323 263 324 0.97 4 9 1.4 8.9e+03 -1.9 0.0 40 55 388 405 382 415 0.70 5 9 5.1e-12 3.2e-08 34.7 0.1 2 56 429 480 428 490 0.94 6 9 0.065 4.1e+02 2.4 0.0 44 65 560 583 558 584 0.86 7 9 3.3e-12 2.1e-08 35.3 0.0 3 54 704 752 702 767 0.88 8 9 0.11 7.1e+02 1.6 0.0 39 53 833 847 824 858 0.77 9 9 1.5e-14 9.7e-11 42.8 0.3 3 65 863 925 861 926 0.87
Sequence Information
- Coding Sequence
- ATGAATGCCATGCGTATTCAAACGACTTTCCCGCCAATTGGCACTTTTACTTTGGACTCAACCCTGGGTCCACCACCGGCGCAGTCGCAGAATCAGCCGCCAATTTCTCAACATCAAACACCAATTGGGATGTTCGATGCCAATGATGTTCCGGAAGTTATTCAAAATCCGGCTACGATCGGAGTGTTCCAATCAAATAGCGTTCTTAGTAATGGAGGTAGTGGTGGTGGCGGCGGCAATAACTCATCCATTTTCAGCTCGCAATCGAGCTCTTCATCAGCTGCCAACGATCCAAGTCAAGCAACTCGAGAGACTGGAATTATTGAGAAACTCttgcaTTCTTATGGATTTATTCAATGCTGTGAGCGTCAAGCACGTTTATTCTTTCATTTTTCGCAATTCAGCGGCAATATCGACCACTTGAAAATCGGTGATCCTGtcgaatttgaaatgacctacGATCGTAGGACTGGCAAACCAATTGCCAGCCAGGTATCGAAGATAGCACCAGAAGTGGTATTGTCAGAGGAGCGTGTTACTGGTACTGTTACTACAGAATTACGCACTGACTGCGCAAACAATTTACTCTCTTCAAGCGAAACCACTGGTCGCATCAGCTATGAAAATCGTGGCGAGTGTTTTTTCTTGCCCTATACCAAAGACGATGTTGAGGGAAATGTTAATTTACGTGCCGGCGATAAAGTCAGTTTTCAAATTGCAACTAACCAAAGAGGTAACCTTGGTGCTTGTCATATCCGTTTAGAGAACCCAGCACAGCCGGTAAAATACCGTGGTGTTGTATGCTCCATGAAAGAATCGTTTGGATTTATTGAGCGCGCTGATgttgtaaaagaaatttttttccacttttctgAAGCTGAAGGAAATGTTGAACTTCGTCCAGGAGATGATGTTGAATTTACAATACAAACACGTAATGGTCGTGAGTTTGCTTGCAATATAACACGGTTACCACCAGGATCGGTTATTTTTGAGGACGTGGATACCACTATCTACAAAGGGCAAGTTTTAAAGCCACTTGACCGCAATAATCCAGCCCGTCAGACAAATGATCCCTTACCCGGTCGCATACGTTACCGCGCACCAGATTACTCTGAAGTTGAAGTACCGTTTGGTGATAAGGATCagaAGGGGGATTTTACTTTGCGTCATGGTGACTGGGTTCAGTTCTTACTTGCTACCGATAGGCGTGATCAATTACAGCGCGCTACTTCGATTTCTTTACTTGACGAAACCTTTAAGGTTTCTGGTGAAAAGCGTGAACAAGGTGTAGTTGCCTCACTTAAGGATGGTTTTGGCTTCTTACGTTGCGTTGAACGAAATTTGCGTTTGTTTTTCCACTTTACGGAAGTGTTGGACACAagccgggaaATCGCTGTGAATGACGAAGTAGAATTTACTGTCGTCCAGGAACCTGGTGTTCCCTATAATACTTCCAGGTTGCATGCCATTCGCATCAAGCATCTACCGCCCAATACGGTGCAGTTTGAAATGCTAATGGCAAGTAATATTGaagGCTCTGTAACCCGCGAGGCTCCTAAAAGCCCAGTTAAGTCCCAGGATCGCGTTGAAGGCGGTGTGATTACATATGATCACGGTGATGTCAAAAAGACTATAATGTATTTCCTTAAAGACTGCGAGAAACCACCAAGAATTGGAGATCGTGTACGATTCGATATCTACTTGGTAAAACGAAACAAAGAGTTCATTGCTGTAAACGTACAGCTTATCGGACAAATGCAACAGTTACACCAGCAAcagttgcaacaacaacaacaacaaccgcaacTTATGTTAACCAATACAACGAACCAactgcaacaacatcaacataTGCACAACCAAAACAATGAGCAAATGCTAATGTCCAATGGTGTCGGGGTTGGTCTTGGTGTCGGCGTTGCCGTGGGCGTAGGCGTGGGGGTTGGCGTTAACACTGGAGGAAACAGCTGTGGTATGTTGCTTCCTCCACAAAACGGATATTTGCCACTGGCCAATTCAACTCAGTTGCTATCCACACCAAAGATTGAAGATTTCAAATTGGACAATAATAACTTAACAATGAATGAACATGGCCAAACTTACCGTGGCTTTATTGCTGTCATTAAAGAGAATTTTGGGTTTATTGAAACGCTTTCGCATGATGAGGAAGTCTTTTTCCACTTCAGCAATTATGTTGGCAATCCGAATTGGTTAGAATTGGGTCAAGAGGTGGAGTACACTCTGTCGCCGAATGGCAACACTTCCGCCTCGGGAAATTGCTTACCCGCCGAGAATGTGCGCACTTTACCCAAGGGTTCCATTCCACAGCCAGCCGTTTTAGAAGGAATACTCAATGGAATAGTAGCACGTCCGTTACGCTGCATCAATCCCGACCAACAGGAATATGCCGGGCTTATTGAAGTATTAGATGAGACCAAACAGAGTGTTTTGACACAACATGAATTTGGTATTACGAGTTTGGTAAATAAGCGTGATTTGCTGCAGAAAGGTGACCTGGTAACCTTCAAGATAGACGAAATAGGCCGCGCTGCGGAGATAAATGCAGTTCGTCAAAAGAAACGTGCAACTGTTGATTCGATCAAAGGACAATTTGGTTTTCTCAATTATGAAATTGAGGATGGCAAGAAGCTCTTCTTTCACATGTCCGAGGTGCAAGGCAATGCGGTTACATTACATCCTGGTGACACAGTTGAATTTTCAGTGGTTACTAAccagCGCAACGGTAAATCGTCAGCTTGCAATGTGCTGAAGATTAATGATCGTCCAGACCGTTTAATATCTCGCCTAAAGCTCAATGCAGATGATACTGTGCCACGTTTAATCATTACGCGAGCACCACGGGGACCACAAAGCAAAGGTTTCTTGCCACAAGCACGAATTGCACGCATTCCAGGTGAGTTTGCGGCCGATTAA
- Protein Sequence
- MNAMRIQTTFPPIGTFTLDSTLGPPPAQSQNQPPISQHQTPIGMFDANDVPEVIQNPATIGVFQSNSVLSNGGSGGGGGNNSSIFSSQSSSSSAANDPSQATRETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAPEVVLSEERVTGTVTTELRTDCANNLLSSSETTGRISYENRGECFFLPYTKDDVEGNVNLRAGDKVSFQIATNQRGNLGACHIRLENPAQPVKYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVELRPGDDVEFTIQTRNGREFACNITRLPPGSVIFEDVDTTIYKGQVLKPLDRNNPARQTNDPLPGRIRYRAPDYSEVEVPFGDKDQKGDFTLRHGDWVQFLLATDRRDQLQRATSISLLDETFKVSGEKREQGVVASLKDGFGFLRCVERNLRLFFHFTEVLDTSREIAVNDEVEFTVVQEPGVPYNTSRLHAIRIKHLPPNTVQFEMLMASNIEGSVTREAPKSPVKSQDRVEGGVITYDHGDVKKTIMYFLKDCEKPPRIGDRVRFDIYLVKRNKEFIAVNVQLIGQMQQLHQQQLQQQQQQPQLMLTNTTNQLQQHQHMHNQNNEQMLMSNGVGVGLGVGVAVGVGVGVGVNTGGNSCGMLLPPQNGYLPLANSTQLLSTPKIEDFKLDNNNLTMNEHGQTYRGFIAVIKENFGFIETLSHDEEVFFHFSNYVGNPNWLELGQEVEYTLSPNGNTSASGNCLPAENVRTLPKGSIPQPAVLEGILNGIVARPLRCINPDQQEYAGLIEVLDETKQSVLTQHEFGITSLVNKRDLLQKGDLVTFKIDEIGRAAEINAVRQKKRATVDSIKGQFGFLNYEIEDGKKLFFHMSEVQGNAVTLHPGDTVEFSVVTNQRNGKSSACNVLKINDRPDRLISRLKLNADDTVPRLIITRAPRGPQSKGFLPQARIARIPGEFAAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01562525;
- 90% Identity
- iTF_00082692; iTF_01562525;
- 80% Identity
- -