Basic Information

Insect: Cheilosia soror
Gene Symbol: Unr
Assembly: GCA_948107745.1
Location: OX443561.1:1452593-1456045[-]

Transcription Factor Domain

TF Family: CSD
Domain: CSD domain
PFAM: PF00313
TF Group: Beta-Scaffold Factors
Description: In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.6e-16 4.4e-12 46.3 0.0 2 65 86 148 85 149 0.95

2 9 0.00029 1.7 9.3 0.0 16 58 185 227 176 235 0.77

3 9 1.7e-18 9.6e-15 54.9 0.1 2 65 245 304 244 305 0.97

4 9 0.78 4.6e+03 -1.7 0.0 40 55 369 386 363 396 0.70

5 9 1.8e-12 1.1e-08 35.5 0.2 2 54 410 459 409 466 0.95

6 9 0.032 1.9e+02 2.7 0.0 44 65 541 564 539 565 0.85

7 9 1.8e-12 1.1e-08 35.5 0.0 3 54 613 661 611 676 0.88

8 9 0.054 3.2e+02 2.0 0.0 39 59 741 761 714 768 0.79

9 9 3.2e-14 1.9e-10 41.1 0.3 4 65 772 833 769 834 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.6e-16	4.4e-12	46.3	0.0	2	65	86	148	85	149	0.95
2	9	0.00029	1.7	9.3	0.0	16	58	185	227	176	235	0.77
3	9	1.7e-18	9.6e-15	54.9	0.1	2	65	245	304	244	305	0.97
4	9	0.78	4.6e+03	-1.7	0.0	40	55	369	386	363	396	0.70
5	9	1.8e-12	1.1e-08	35.5	0.2	2	54	410	459	409	466	0.95
6	9	0.032	1.9e+02	2.7	0.0	44	65	541	564	539	565	0.85
7	9	1.8e-12	1.1e-08	35.5	0.0	3	54	613	661	611	676	0.88
8	9	0.054	3.2e+02	2.0	0.0	39	59	741	761	714	768	0.79
9	9	3.2e-14	1.9e-10	41.1	0.3	4	65	772	833	769	834	0.87

Sequence Information

Coding Sequence: ATGAGAAACCTTAACATGCAAACAAGTTTCCCACCAATTGGAACTTTTACTCTCGACTCAACTTTGGCACCACCACCTCAACCTCAAAGCACGATCGGGATTTTTGATGCCAATGAAGAACCAACTACCATCGGTGTGTTCTCGTCGAATAGCGTCCTAACGAATGGTATCAACACCACTGGAAACTCATCGTCGTCATCCTTTGGAGCATCAAGCATTACGGGTAACAATGATTCAAGTCAAGCAACTCGCGAAACTGGGATCATTGAGAAGCTTTTGCATTCATATGGATTTATCCAGTGCTGTGAACGTCAGGCTCGTCTGTTCTTTCATTTTTCACAATTTAGTGGCAACATTGACCATCTCAAGATTGGAGATCCGGTTGAGTTCGAAATGACTTATGATCGACGTACTGGAAAGCCCATTGCAAGTCAAGTTTCAAAGATCGCTCCCGAAGTCgtcCTTTCGGAGGAGCGTGTAACTGGTACTGTGACAACTGAACTTCGTACCGATTGTGTCAATAACCTTTTGGCATCTAACGAGACTACTGGTCGTATTAGCTATGAGAATCGTGGCGAATGTTTCTTTCTACCCTATACCAAAGACGATGTTGAGGGCAATGTCAATCTAAGGGCTGGCGATAAAGTTAGCTTTCAGATTGCTACAAACCAAAGAGGAAATTTAGGTGCTTGTCATATTCGTCTAGAGAATCCAGCGCAGCCAGTTAAGTATCGTGGTGTTGTTTGCTCGATGAAGGAGTCATTTGGGTTTATTGAAAGGGCCGACGTTGTTAAGgaaatatttttccatttcTCCGAAGCTGAAGGCAATGTTGAGTTGCGTCCAGGTGATGATGTCGAATTTACCATCCAAACAAGAAATGGACGCGAGTTCGCTTGCAATATAACTCGCCTGCCTCCTGGGTCAGTTATATTCGAGGATGTTGATTCATCCATATATAAGGGACAAGTTCTCAAGCCGTTGGACCGCAATAATCCAGCTCGTCAGACCAGCGACCCTCTGCCAGGACGCATTCGATTCCGGGCTGCGGATTACTCTGAGGATGAGGTTCCCTTCGGTGACAAAGATCAAaaggGCGATTTTACTCTTCGTCATGGGGATTGGGTACAATTTTTGTTGGCCACTGATAGACGGGATCAATTGCAAAGGGCAACGTCTATATCACTGCTCGATGAGACATTCAAGGTATCAGGAGAAAAACGTGAGCAAGGAATTGTATCATCCTTAAAAGATGGCTTCGGATTTTTACGTTGTGTGGAACGCAACGTTCGTTTATTCTTCCATTTTACAGAAGTATTGGATACCAGCCGTGAAATTGCCCTCGGAGATGAAGTGGAATTCACCGTGGTTCAGGAACCTGGAATTACCTATAACAATTCTCGACTTAACGCGATTCGCATAAAATATCTTCCACCAAATACGGTTCAATTTGAAACCCTAATGGCAAGCAATATTGAAGGTTATGTTACTCGTGAAGCACCAAAAAGCCCAGTAAAGTCACAGGATCGTGTGGAGGGTGGCGTTATTACATACGATCACGGTGACAGCAAAAAGACTATTATGTATTTTCTTAAAGACTGCGAAAAACCACCAAGAATTGGCGACAGAGTTCGCTTTGATATATGTTTGgttaaaagaaataaagaattCATTGCAGTTAACGTAACGCAGCTGCAACAAAACGCAACGAACCAAAACAATCAGCCAGACGAAGTAATAGCAAATGGAGGCACCCAAAATGGATTCAATGCTCCGAAAATCGAAGATTTTAAAACGGAGAACAATAACGTAGCGGAACCAGGCCACACCTACCGCGGATTCATAGCGGTTATAAAGGAGAATTTCGGTTTTATCGAAACACTTTCCCATGACGAAGAGGTATTTTTCCACTTTAGCAACTATGTTGGTAATCCAAATTGGCTAGAGTTGGGTCAAGAGGTCGAGTATACCCTTTCCCCGAATGGCAACACTTCGGCATCGGGAAATTGTTTGCCAGCGGAAAATGTTCGCACATTGCCAAAGGGATCAATCAAGCAACCAGCAGTTTTGGAGCCTGTCAATAACGGGGTGGTTGCTCGCCCACTGCGTTGCATCAACCCCGACCAACAAGAGTATGCTGGCCTCATTGAAATTTTAAACGAAAACAAGGTTGCAGTGTCACAACATGAGTTCGGCATAACAAGCTTGACTAATCGCCGTGATCTCCTACAAAAGAATGATTTAGTTAGTTTTAAAATTGATGAAACAGGACGTGCTGCTGAGATAACTGCCGTACGCCTAAAGAAGCGCTCCACTGTGGACTCAATTAAGGGACAATTTGGATTCTTAAACTATGAGATTGAGGagggaaaaaaattattttttcatatGTCTGAAGTTCAAGGCAGTACTGCTGCCCTGCACCCAGGAGACACTGTAGAGTTCTCTGTGGTGACCAATCAGAGAAATGGAAAGTCGTCAGCATGCAACGTAGTAAAGATAAACGATAGGCCAGACAGACTCATATCCCGCTTAAAGCTCAACAGTACGACCGACGATTCCTTACCGCGCTTAATTGTGACTAGAGCACCCAAAGGGCCGCAGGGAAAAGGATTCTCCCCACAAGCCCGCCTTTACAGAATTCCTGGTACTAAATAA
Protein Sequence: MRNLNMQTSFPPIGTFTLDSTLAPPPQPQSTIGIFDANEEPTTIGVFSSNSVLTNGINTTGNSSSSSFGASSITGNNDSSQATRETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAPEVVLSEERVTGTVTTELRTDCVNNLLASNETTGRISYENRGECFFLPYTKDDVEGNVNLRAGDKVSFQIATNQRGNLGACHIRLENPAQPVKYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVELRPGDDVEFTIQTRNGREFACNITRLPPGSVIFEDVDSSIYKGQVLKPLDRNNPARQTSDPLPGRIRFRAADYSEDEVPFGDKDQKGDFTLRHGDWVQFLLATDRRDQLQRATSISLLDETFKVSGEKREQGIVSSLKDGFGFLRCVERNVRLFFHFTEVLDTSREIALGDEVEFTVVQEPGITYNNSRLNAIRIKYLPPNTVQFETLMASNIEGYVTREAPKSPVKSQDRVEGGVITYDHGDSKKTIMYFLKDCEKPPRIGDRVRFDICLVKRNKEFIAVNVTQLQQNATNQNNQPDEVIANGGTQNGFNAPKIEDFKTENNNVAEPGHTYRGFIAVIKENFGFIETLSHDEEVFFHFSNYVGNPNWLELGQEVEYTLSPNGNTSASGNCLPAENVRTLPKGSIKQPAVLEPVNNGVVARPLRCINPDQQEYAGLIEILNENKVAVSQHEFGITSLTNRRDLLQKNDLVSFKIDETGRAAEITAVRLKKRSTVDSIKGQFGFLNYEIEEGKKLFFHMSEVQGSTAALHPGDTVEFSVVTNQRNGKSSACNVVKINDRPDRLISRLKLNSTTDDSLPRLIVTRAPKGPQGKGFSPQARLYRIPGTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01562525;
90% Identity: -
80% Identity: -