Xvio005452.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylocopa violacea
Gene Symbol
Baz2b
Assembly
GCA_963969225.1
Location
CAXAJV010000006.1:28298988-28321435[-]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.4e-22 2.5e-18 65.6 0.0 4 76 530 602 527 603 0.94

Sequence Information

Coding Sequence
ATGCCGGGCGGATATGGGCTGGGGGCCCATCATTTGCCATCCGCTTACGCCATCCTGGGCCGCGGAGGCTCTGCACCCGGTTTCGGGGGCCACACGCCTGCATCCGCGCCACCGCCACCCCCGTACTCCCACAGCAGCCTTGGTACTCTGAGCGTAGCCGCCAGCCAGGCTGCGAGTTTAGGTATTAATCCTGCTAGTGCAGCATGGTGGACAATGGCCTCGCACCTAGCGGCACAGGACTACCTCGCGAGGTTACAAGGAGCGGCAGGACTGCCGGGATTTCCTCCCGGTGCCGAGAGCCTCCTGCCACCCTATCCTGCCTCTCTACTTAATCCCCCGTCCCTTTCGTCTCACAAGTCTAGTAAGTCTAAGTCAAGCAAGAGTCACAAGACGCCAGCGAGCAGCAGTAGCTCGACGACGCCGAGCATGACGAGCAGCAGTTTGCCGGTCTCGACCCAAGCACCGGTCACGTCCTCTCATCACAGCACGTCGGCCAGCAGCACGCCGAATTCGCAAACGAACGTCGTCAGCGATCCTAGCAGTATATTAGGGGGCGTACGACTGCCTCCTGACACGGAGATCATCAAGTACACGTCGAGCATAGTCGGTCCAAAGGTTCCTGGCACAACGAACCGCGGCAGGAAGAAGACCATATCCTTGGACACGCCAAGCGTGAGCGTGCACCCACCGCCGGTACCTGCTCTTACCGCTCATCAAACAAACACGACGTCGACGTCGCTGATGATGGAGCCGAGAAAGTACAATCGCACAGGGACCGAGTCGAACGATTATAGAGAGTCGGTGGATCGCGTGGAGGTGATCAAGTTGCCGGCACACTCGACGAACGGCTCGGTTCTGCCAGCCCCGTCGTCGTACACGACCACCACAAACGCGAGCAATTCGAACGACTCGGACGCGCCGTTGAACCTGTCGCTGAAACCATCGACGACGAGCGGTAGCTCGCCGATTTCCAGCAGTCAGCCGCTCAGCCAGCTCAGTAATTTAAGCCAGTCGCTGCTCGCCTCCGATCGAACCTCGAGGAGAAAGCCCGGGCCCAAGCCTCGAAGGGTGCCCCAGAACTCGGTGCCGGTGCCAGCGTCCCCGAGTCCGTCGTTGGCGCAGCTGTTCGCCGCGGCGGATTCGCCGCAACGGCCGAGCAGCGGAAGCGAGGAGAGCGAGAGCGCCAGCTCGACGCATCACAAGGATGGACGGCCAAGGAATCTAGGCCGTGGAGTGTCCAAACCGAAGAAGAACACGGTCGCCTCGCTGCTGGCTCAGAGCAGAGCTCTGGGCATCAAACCGACGCCCACCTTGGACCCAAATGTGCCATTGTCTCATCAGGTCTCGTTGCTCAGGTCGAACATTCTGGCTGCTCAGCTGCACGCGAGCGCAACCGGCCAGAGCGACGACAAGAACCAGCGGTCTTTGCAGGAGAAGATGAAGAACAAGCTGCTCGAGGTGTCCGGCGAGGAGAGCAACATGGACGTGACGAGCGAGAGCGGCAGCAACACGGACGTCGTGACGGACACCGACGACGACAACGCGGACGGCGTGTCCAGCGCGAAGAGGAGGAAGGTGAAGCCGAGCGAGAGGGACCTTCAGGTGCCCCTCGAGCGCGGCTGGAAGAGGGAGACTGTCATCAAGGGACTGGGGAAGACGGGGGTGATAAAGGGTGACGTGTCTTATTATAGTCCTTGCGGAAAGACGTTCAGGAGCAGTCCGGATTTGGCGAAGTTTCTGGATCAACAGAATCCGCCCGAGTTGACCACGGCGAACTTCTCGTTCTCGTCTCGTCCGCTGGTGGGCGAGTTCCTGCAGCCGACGATGGGCCTCGCGGAGGCGGAGTTCGTTAGGCTGGGCGCCCAGGAAGTGGCCAGAAGACTGGAGGAGCTGAGGGCCGCGGGTGGTTTCAGGGACGCGCGAACGAACAATCAGTACGAGAGGGAGAAGCTCGCGTACGCGAAGAAACTGGCGAAGGAGGAGGCTCAACGGCACAAGGAGCAGGCTAGGCTCATCAAGGAGCAAGAGAAAACGGAGAGGCAGGAGGCGGTGAGACGGGAACGGGAGATCCGAAACCAACAGCTGCTCGAGGGTCGAAAGCGGCTAGCGTTCACGATCAAGCAGAAAATGAAGATCATCCAAGAGATCGAACGCGGTAAGAGCAAGAGCGACGTGGCGCGCGAGCTGGGTCTGGCTAGCAGCACGGTGGCCACTATCTGGAAGAACCGCGAGAGCATCGCTGAGAGCTGGAGGAACCGCGACATGATGCAGCACACCGACGCGGAGGATCAGGTCGTGAAAAAGTCCAGCCTGTCCTCCGTCGCGGCGAATCTGGCGTCCGTCGCATCGCTGGTGACGAACAGCACGGTGATGAACACCGTGAACACCACCAGCAACGCGAACACCACCACCTTGCCGGCAGCGGTCGTGGTGACGCCGCCCCAGGTGCAGGTGgtaccgccgccaccgccgcctctCCCATTGTCGACCACCGCCCCCGTCACGGTCGTCCCGTCGACGTCTCAACCGACGCAGCCGACCACGCCAACCTCCGGCACCACGTCCACAGGCACCACCACCACCAACGCCAGCATGGACAATACCCAGCAGGCCCAGACCCAGACGCAAAGTCAGGAGCTTCTGGAGGCTCGGAAAAAACGGCAGGAAGAGGTGGAGAAGATACGACAGGAAGAGCAACAACGGAAGCAACAGGAACGAGAGCTGAAGCGGCAGCAGGCGGTTATGCTGAAAGAACAGATGTACATGCAGGAGCTCACCAAGCAGCGCGAGATGCTCTACACCGTCGAGCTGGAAAGGGAACGAAGGAGGCAGCACATGGCGTTGGTGCGAGCGTTGGAGAACCGTCGAAAGATGGAGGAGAAGGAAAAGAAACGACTGGAGGCGAGGGCCGAGAGAATAGCGACGAAGGAGAAACGCGCGGAGCAGAGGAAGATGGAGATGGAGCTGATCGAACAGATCAGAAAGCCCGTCGAGGACATGGAGTTGACGGATCACAGACCACTGCCAGAACTGAAACGAATACCCGGACTGAAGCTGTCTGGCCAGGCGTTCGCGGACATCGTGATGGTGTTCGAGTTCCTGCATAATTTCGGCGAGACTTTGGGTTTTGACATGGAATCGCTCCCGAGCCTGAAGAGTCTCCAAATGGCCCTGCTCAACGACGAAGAGGCGGAGGAGGAGCTCCTGTCCGTGATGACGCACCTGTTGGTATGCGCGATCGAGGATCCAGGAATCCCTCAACCAGCGAGACACACGACGGGCCTCGGGCAGAGCCTTCGTCAGGCGGACATCACGCACGCCAACATCAGCGAGGTGTTACGGATTTACTTGTACGCGAACGCGACGGGAGAGGTGAAGGCTCTGACCGGGGTCTGCCTGGAACGCGAGCGCGACAAGAAGTTCGCCGACCACCACCAGAACGGCGGCGATTACGCGTCGACCTGCTCGGGCAAGAACGCCCAGTTCTACGAGCACCTGCACAACAACGAGACGTGGAGGATGTCCGAGAGGCTGAGGGACAAGCCGTTCCTGGCACTGAACCCGACGCACAAGGCGCAGATGCTTGCGTTCCTCTGCAACGAGCTGTTGCAGAACAAGGCTGTGATCAGGCAGATCGAGGGGAGCCTCGAGACGGTGGCTCACCTGAGGAAGGAGAGATTTGTGCTGGATACGAAGATCAGGAAGTTGAGGCAACTGCATAGTCGGAAGGTACGGATGGAAGCGGTTGGCGTGATCGTTAACAAAACCGGAGATACTATCACCATAGAGAAAAAAGAGGTCGACGAGGAGGGTAACACGACGTCGACGGCAGTAGGGACGACGCCCACTCCAGATGAGATCCATCACGAGGACGAGGTTGAGGACATGTCCGAGAACGAGAGCGAAGGCACTCAGCCTGAAGAGGAGGAGGACAAGAATCTGTCTGGCGAGGAACTTGGTAAAAAGTTGGACAAACTGTTGAAACAGTCGGAGGAGCAATTGCAAAAGTTGAACAGCTCCTCGAAACAGCTCAGGGCGCACATATTCGGCCAGGACAGGTACTGGAGAAGATACTGGGAGCTGGCATGCGCTGGCGGCATCTTCGTCGAGGCTATGGAGAGCGCCGAGCCGGAAGTTCTGGGGTTGCAGGCCGAATTGGACGGAAAGTACAAAAACATGCCGGTGGAAGAGAAGTCCGAGACGAAACAGGAGGACGCCAAGCTGGAGAATCGCGAGAACGAGGCACCCAACGACGTCAAGGAGGAGAAGTTCAATTCCAGCGAGCAAGAGGAAGACGCCAAGTCTCTGGTGGACAAAACAAAGTCCGAGGACGACGATGTCAACTGCAAGAAGGAACCGATGCTAAATTATGAGAATTCGACGAACGTAAAGGAAGAGAAGAAGAACGACTTGGACGGTTCGATGACCGACGCGAAGACCAACGTCACGTCCGAAGAGATTAAGCAGGAAACAGAGGTGGTTAGCATGGATGTGGATGTGAAAGACGAGGCGAAGAAGGAGAGCGACGAAACGGACGAGGACACGAAGCCAGCGGTGAAAATGATGGAGGACAAAATCGTCGAGACGATACCGAATGGCGACAAGTTCAATCACGTCAATAATCTTCATAATGGGAAGGAACTGAacggcaccttcatatccaATAACAGCAACGAATCCAACTGGTTCTCGATCCTGCCACGGGAgacttgcgacacgcctgggccGAGTACCAAGCAGATATTTGGGATAGCCGAACCGACCGAACTGAGAATACCAGTGTTCCCTCCGCCGGCTAGTCCGAATTACGACAGGTGCGACAGTCCCGCCCCCTTGATTTTAACTCAGGACGAGGCAGCACAGCTCGAGTATCTGAAAGTGCACGGTTTACCGCCTCCCGGTGAAGCCAAACCGGTACCAAGAGATTTGAGATACGGTTGGTGGAGAATAACGGACGTCGACACGTTTCAAGAACTGTTGGAGCACCTCCATTCGCGCGGTGTCCGCGAGAAGGAGCTGAAACGCACCACGTGGGCGACCATGGAGTCCTTCCTGGCCGTCACGGGCAAGATCAACGTGGACCCTGGCAACCTGACCGCGACCGAGCTTCAAGCCACACCGGACGAGCCTGACACCCCGATTCCGCAGCCGGATAACCCGGAGATTTGGAGCGAGCAGGTCGCGCTACGCGTGGACGCGCAGCTGTTGGAGCAAGTCGAGGCCCTCGAGGACAAGGTGGCGAACGCCAGCATGCAGGTCAAAGGCTGGAAGCTACCTCCACGGGCGGGAACCGAGGAGGCAGAGGAGATTGAGAAATTGAACGAAATGGAGAAGATCAGTGCGGTCGAGCAGGCGCGGCAAAGGTTACTGTCTCTGGAGGCTGCTATAGAGAGGAGATACTTGAAACCACCGTTGGGCGTTTGCACGGGAGATCCAAATTTAACAGCATTAAAGGCGGAGCAAGCAGCGGCCGCAAACGCGAATTCGAATAATTCGGATCAGAGCAATCAGACCCCGATACCGCAAGAAGAAACGACACCGAGAGGGCTGAACAACTGGCGAGAGGCAACGGCACGAGCGCACACGTCGGCTCAGCTCGCGATGGCGCTTTACATGTTGGAGGCCAGCATCGCCTGGGACAAGAGCATCATGAAGGCTGTGAGTCTAACACCAGCTAGAAACTCGGTCTGCGTCAAGCTACGAAACCGCTGCGTCTCACTCAAAGCTACCACTCAGTACAATCAGCTATTGACTACTTCTCAGGCCTCTAATTGTCAGTTCTGTCACAGCGGAGATAACGAAGATAAACTGTTATTGTGTGATGGTTGTGACCGCGGCTATCATACTTATTGTTTCCGTCCAAAaatggaaaacattcctgatggtGACTGGTATTGTCACGAGTGCATGAACAAAGCGACAGGGGAACGAAACTGTTTGGTATGCGGAAAGAGGGTTGGTAAAAACTTAGTGCTATGTGAACTCTGCCCACGGGCGTATCACACTGACTGCCACAATCCTGTTATGCCAAAAATGCCAAGGGGAAAATGGTATTGTTCTAATTGCCACAGTAAACAACCAAAGAAGAGAAATAGTAGTCGAAGGAGTCATACCAAAGGGGGAGGCACCAGAGAAAGTGAAAGTTCTGATCATCCACCAGCTAGTCCAACGCCGTCAACGGCATCGAACACGCACGTAGAGGACGTCAGTTCGTCGGAACCGGCAACCCCAACTGCCTCGCCACGGAAGGAGGGTAACAATAGGACGCTCACCAAGAAACAGCAACGAGAGTTGGCTCCTTGTAAGGTGCTACTCGAACAGTTGGAGCAACAGGACGAGGCCTGGCCGTTCCTCTTGCCGGTGAACACCAAACAGTTTCCAACCTACAAGAAAATTATTAAAACACCCATGGATCtcagtacgatcaagaagaaATTGCAGGACTCCGTGTACAAGTCTCGCGATGAGTTTTGCGCCGATGTCAGACAGATGTTCATCAACTGCGAGGTATTCAACGAGGACGACAGTCCCGTGGGGAAGGCCGGACACGGGATGCGCAGTTTCTTCGAAATGCGCTGGACCGAGATTACCGGCGCGCCACCACCGCACCCACAAACGCATAGCTGA
Protein Sequence
MPGGYGLGAHHLPSAYAILGRGGSAPGFGGHTPASAPPPPPYSHSSLGTLSVAASQAASLGINPASAAWWTMASHLAAQDYLARLQGAAGLPGFPPGAESLLPPYPASLLNPPSLSSHKSSKSKSSKSHKTPASSSSSTTPSMTSSSLPVSTQAPVTSSHHSTSASSTPNSQTNVVSDPSSILGGVRLPPDTEIIKYTSSIVGPKVPGTTNRGRKKTISLDTPSVSVHPPPVPALTAHQTNTTSTSLMMEPRKYNRTGTESNDYRESVDRVEVIKLPAHSTNGSVLPAPSSYTTTTNASNSNDSDAPLNLSLKPSTTSGSSPISSSQPLSQLSNLSQSLLASDRTSRRKPGPKPRRVPQNSVPVPASPSPSLAQLFAAADSPQRPSSGSEESESASSTHHKDGRPRNLGRGVSKPKKNTVASLLAQSRALGIKPTPTLDPNVPLSHQVSLLRSNILAAQLHASATGQSDDKNQRSLQEKMKNKLLEVSGEESNMDVTSESGSNTDVVTDTDDDNADGVSSAKRRKVKPSERDLQVPLERGWKRETVIKGLGKTGVIKGDVSYYSPCGKTFRSSPDLAKFLDQQNPPELTTANFSFSSRPLVGEFLQPTMGLAEAEFVRLGAQEVARRLEELRAAGGFRDARTNNQYEREKLAYAKKLAKEEAQRHKEQARLIKEQEKTERQEAVRREREIRNQQLLEGRKRLAFTIKQKMKIIQEIERGKSKSDVARELGLASSTVATIWKNRESIAESWRNRDMMQHTDAEDQVVKKSSLSSVAANLASVASLVTNSTVMNTVNTTSNANTTTLPAAVVVTPPQVQVVPPPPPPLPLSTTAPVTVVPSTSQPTQPTTPTSGTTSTGTTTTNASMDNTQQAQTQTQSQELLEARKKRQEEVEKIRQEEQQRKQQERELKRQQAVMLKEQMYMQELTKQREMLYTVELERERRRQHMALVRALENRRKMEEKEKKRLEARAERIATKEKRAEQRKMEMELIEQIRKPVEDMELTDHRPLPELKRIPGLKLSGQAFADIVMVFEFLHNFGETLGFDMESLPSLKSLQMALLNDEEAEEELLSVMTHLLVCAIEDPGIPQPARHTTGLGQSLRQADITHANISEVLRIYLYANATGEVKALTGVCLERERDKKFADHHQNGGDYASTCSGKNAQFYEHLHNNETWRMSERLRDKPFLALNPTHKAQMLAFLCNELLQNKAVIRQIEGSLETVAHLRKERFVLDTKIRKLRQLHSRKVRMEAVGVIVNKTGDTITIEKKEVDEEGNTTSTAVGTTPTPDEIHHEDEVEDMSENESEGTQPEEEEDKNLSGEELGKKLDKLLKQSEEQLQKLNSSSKQLRAHIFGQDRYWRRYWELACAGGIFVEAMESAEPEVLGLQAELDGKYKNMPVEEKSETKQEDAKLENRENEAPNDVKEEKFNSSEQEEDAKSLVDKTKSEDDDVNCKKEPMLNYENSTNVKEEKKNDLDGSMTDAKTNVTSEEIKQETEVVSMDVDVKDEAKKESDETDEDTKPAVKMMEDKIVETIPNGDKFNHVNNLHNGKELNGTFISNNSNESNWFSILPRETCDTPGPSTKQIFGIAEPTELRIPVFPPPASPNYDRCDSPAPLILTQDEAAQLEYLKVHGLPPPGEAKPVPRDLRYGWWRITDVDTFQELLEHLHSRGVREKELKRTTWATMESFLAVTGKINVDPGNLTATELQATPDEPDTPIPQPDNPEIWSEQVALRVDAQLLEQVEALEDKVANASMQVKGWKLPPRAGTEEAEEIEKLNEMEKISAVEQARQRLLSLEAAIERRYLKPPLGVCTGDPNLTALKAEQAAAANANSNNSDQSNQTPIPQEETTPRGLNNWREATARAHTSAQLAMALYMLEASIAWDKSIMKAVSLTPARNSVCVKLRNRCVSLKATTQYNQLLTTSQASNCQFCHSGDNEDKLLLCDGCDRGYHTYCFRPKMENIPDGDWYCHECMNKATGERNCLVCGKRVGKNLVLCELCPRAYHTDCHNPVMPKMPRGKWYCSNCHSKQPKKRNSSRRSHTKGGGTRESESSDHPPASPTPSTASNTHVEDVSSSEPATPTASPRKEGNNRTLTKKQQRELAPCKVLLEQLEQQDEAWPFLLPVNTKQFPTYKKIIKTPMDLSTIKKKLQDSVYKSRDEFCADVRQMFINCEVFNEDDSPVGKAGHGMRSFFEMRWTEITGAPPPHPQTHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01232996;
90% Identity
iTF_00873798; iTF_00229352; iTF_01417705; iTF_00183284; iTF_00303030; iTF_00982966; iTF_00982289; iTF_00864636; iTF_01424381;
80% Identity
-