Xvio010105.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylocopa violacea
Gene Symbol
lov
Assembly
GCA_963969225.1
Location
CAXAJV010000014.1:14085589-14092604[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.5e-18 3.8e-15 55.5 0.0 1 44 539 582 539 583 0.96

Sequence Information

Coding Sequence
atgtcgagcgccgCGGACAGTCCTGATGGGATGGCTTTGCAGTCGCACTACTCGTTACGATGGAACAATCACCAGACGCACATACTCCAGGCCTTCGAGGCGCTGCTGCACGCGGAAATACTCGTCGACGTGACCCTGGTCTGTGCCGAGACCAGCCTCAGGGCGCACAAGGTCGTCCTTAGCGCTTGCAGTCCATTCTTCGAGAGGATATTCGCGGAGCACCCCTGCAAACATCCGGTGATCGTACTAAAGGACTTTCCCGGGCACGAAGTAGCGGCGCTGATCGACTTTATGTACCGTGGCGAGGTGAGGGTCGGTCGCGAGGAACTCCCAGGACTGATGAGAGCCGCGGAGAGTTTGCAAGTGCGTGGATTAGCGTCGTCGGAGCCGAGGCCGACGTCCCCGCCGGAAACGCCGACCGCCGATCTTCTCCTAGGCGAGCCGTCGACGCCGGAGGGCGCCAGGCAGGGCACCCCGGAGGAGGATGACAACGCGTCGGAGAGCACGGCGCCACCGTCCACGCGAGAGCCGGCACCGGTGACGACGCCCACTATTTTTCACCCAGCGAGGGACCATCGCGACAGGTTGCCGCACATGGGCCACTTGAACTTTGGGATACGCGAGCTAAGGGAGAGCTGCGGGTCGCCGCTTCTACCGCGACGGAAGCAGGCGCGACCGCGGCGGAGATCCGGCGAGCTGGTGCCGCAGGACCTGAGTCGACCCCATCCACCGGCGAGTCTGAGCCCGCCGGCGAGCGGATTGAACCTGACCAGTAACCAGCAACAgtcgcagcagcaacagcagcagcaacaccACCAACAGTCCTCGGCGAGCTCGCAGAGCCAACAACAGCAGGAAGACATGGCGGAGAATCTCTCGATGAAACGATCGTTGTCGCCGAGCGGAGCCGATCACCACCACGTGAAGGCGGAGAGCAGCGAAGCGGCGAGCAGTCCGAGAGGATCACCGTTAACCGGCACGAGTCTGCTGCACCCGGACGGTTCCCTCCAAGACATCCCATCCGCTGCGGCagcagcggcggcggcggcggctgcgGCCGGCTTGCCCACGATGTCGGCGTTATCGCTGACACCGCCACATCATCACAGCGAGTACCTGACGAGTTTGGGCCAGTTGGCGGCCCAGTGGTTACCGAATCATCCGCAGAGCCAACTGCCACCTCCGCCTCAGGGTCATCATCCGCGGGATGGAAGTCCCCACGGACCTAACAGAACGCATCCGTAtcaacagcagcaacagcaacagcagcagcagcaacaggaaTCCCCGCTGACACCGCGGCGAAGTTCCGTCACGACGATGTTCCCGTTGGACGGCGTCGCGTCTCTAGGCGGCGGACTGTTCCCTCACGCGGGCGCTCTCGACAGGGGATCCCTTTTAGCGGATCTCCACGATAGCTTCAAACCGGAAACGCTGCACGGGCTGTTCGGTGCGGCAGGGCTGGGCGGTCATCACCCGGGTAAAAAGCCAAAGAAACACAGGGGCGACGGTGACGCGCCGCGCAGATGGGGCGACCACGGTAGCCGAGGTTTGCCCGTGGGCAGGCCGAAGGGCCAGCACAGCGCGCCCAGAGGCGGACCTCCCAGATCGTGGACGAACGCGGAACTGACCGAGGCGCTGCAGCACGTTTGGAACAAGAAGATGACCACGTCGCAGGCAAGCAGGATCTTCGGTATACCGTACAACAGCCTGCTGATGTACGTGCGAGGGAAATACGGGAAAAGTTTGAAACTCGAGCAACTGCGAAGGGACTGCACGGGCGCGACGACCGGCGAGGTGGTAATGAATTCGCTGAACAACAACGTCAAGGCTGTCCAGCCGCCCACGCAAATGGCCCATCCGCTCGCCGGTCTGCCACCTCATCCGGGTGACGATGGTGGTTTTCCTCATCACTCGTTGCTCGCCGGTAACCTACCGCAGGGTTTCTTTCCCGACTTCGCCGCGGCGGCGTTTCCCGTTCCGGTCAGTATGGTGCATTTACTACCACCCAGCGAGCAAAAGGCGTTCGAACCACCGGCGAAccccggcggcggcggtggcggcggcggcggtggcggcaacGGTGCTGGCGATCTCTCCGCGATACGGAACAGTCGAACCCCGTCGCCGATCGACCATCACCATCATCACGAGTCACTGCAGCCGCAACCGCCGCAATCGGCGCCCGCGCTACTTCAGCAAAATGGTTCGGATTAG
Protein Sequence
MSSAADSPDGMALQSHYSLRWNNHQTHILQAFEALLHAEILVDVTLVCAETSLRAHKVVLSACSPFFERIFAEHPCKHPVIVLKDFPGHEVAALIDFMYRGEVRVGREELPGLMRAAESLQVRGLASSEPRPTSPPETPTADLLLGEPSTPEGARQGTPEEDDNASESTAPPSTREPAPVTTPTIFHPARDHRDRLPHMGHLNFGIRELRESCGSPLLPRRKQARPRRRSGELVPQDLSRPHPPASLSPPASGLNLTSNQQQSQQQQQQQHHQQSSASSQSQQQQEDMAENLSMKRSLSPSGADHHHVKAESSEAASSPRGSPLTGTSLLHPDGSLQDIPSAAAAAAAAAAAAGLPTMSALSLTPPHHHSEYLTSLGQLAAQWLPNHPQSQLPPPPQGHHPRDGSPHGPNRTHPYQQQQQQQQQQQQESPLTPRRSSVTTMFPLDGVASLGGGLFPHAGALDRGSLLADLHDSFKPETLHGLFGAAGLGGHHPGKKPKKHRGDGDAPRRWGDHGSRGLPVGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRRDCTGATTGEVVMNSLNNNVKAVQPPTQMAHPLAGLPPHPGDDGGFPHHSLLAGNLPQGFFPDFAAAAFPVPVSMVHLLPPSEQKAFEPPANPGGGGGGGGGGGNGAGDLSAIRNSRTPSPIDHHHHHESLQPQPPQSAPALLQQNGSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01539710; iTF_00964386; iTF_00964577; iTF_01071106; iTF_01070951; iTF_00866797; iTF_00866624; iTF_01420194; iTF_01419557; iTF_01419751; iTF_01421039; iTF_01420853; iTF_01420379; iTF_01419113; iTF_01418919; iTF_00873910; iTF_00873718; iTF_01418270; iTF_01418460; iTF_00231907; iTF_00214318; iTF_00232080; iTF_00232531; iTF_00214487; iTF_00232695; iTF_00184036; iTF_00024713; iTF_00183861; iTF_00024538; iTF_00625416; iTF_00625606; iTF_01498312; iTF_01498113; iTF_00861995; iTF_00861794; iTF_00684876; iTF_00684716; iTF_00684261; iTF_00684085; iTF_00684086; iTF_00684286; iTF_00864556; iTF_00864740; iTF_00391438; iTF_00391211; iTF_00961742; iTF_00961928; iTF_00633743; iTF_00633548; iTF_00983535; iTF_00983688; iTF_00222001; iTF_00221841; iTF_00763153; iTF_00773713; iTF_00773927; iTF_01454289; iTF_01453994; iTF_00216498; iTF_00216305; iTF_01069074; iTF_01066860; iTF_01067055; iTF_01068891; iTF_00360130; iTF_00361002; iTF_00360311; iTF_00360826; iTF_01065672; iTF_01065476; iTF_01069770; iTF_01069572; iTF_01068396; iTF_01068202; iTF_01066361; iTF_01066161; iTF_01122554; iTF_01122352; iTF_01070463; iTF_01070277; iTF_01067712; iTF_01067532; iTF_00761075; iTF_00760907; iTF_00865428; iTF_00865233; iTF_00183381; iTF_00183204; iTF_00862677; iTF_00862479; iTF_01417621; iTF_01417808; iTF_00863190; iTF_00863366; iTF_00962423; iTF_00962610; iTF_00982391; iTF_00982885; iTF_00983085; iTF_00982207; iTF_00306169; iTF_00306385; iTF_00861274; iTF_00861049; iTF_00733884; iTF_00734061; iTF_00762653; iTF_00762469; iTF_00863869; iTF_00864074; iTF_00084446; iTF_00084667; iTF_00086083; iTF_00085514; iTF_00088939; iTF_00085201; iTF_00086422; iTF_00088697; iTF_01169276; iTF_01169085; iTF_00087301; iTF_00087848; iTF_00087018; iTF_00088147; iTF_00118110; iTF_00117917; iTF_00676126; iTF_00675939; iTF_00963294; iTF_00963106; iTF_00966110; iTF_00965956; iTF_01424478; iTF_01424284; iTF_00223103; iTF_00223297;
90% Identity
iTF_01539710; iTF_00360130; iTF_00361002; iTF_00360311; iTF_00360826; iTF_00964386; iTF_00964577; iTF_00086083; iTF_00085514; iTF_00085201; iTF_00086422; iTF_00087018; iTF_00087301; iTF_00088147; iTF_00087848; iTF_00088697; iTF_00088939; iTF_00084446; iTF_00084667; iTF_00684261; iTF_00684085; iTF_00684086; iTF_00684286; iTF_00684876; iTF_00684716; iTF_00183381; iTF_00183204; iTF_00024538; iTF_00024713; iTF_00118110; iTF_00117917; iTF_01065672; iTF_01065476; iTF_01069770; iTF_01069572; iTF_01068396; iTF_01068202; iTF_00961742; iTF_00961928; iTF_00983535; iTF_00983688; iTF_00761075; iTF_00760907; iTF_00962423; iTF_00962610; iTF_00306169; iTF_00306385; iTF_01066361; iTF_01066161; iTF_01122554; iTF_01122352; iTF_01068891; iTF_01069074; iTF_00676126; iTF_00675939; iTF_00963294; iTF_00963106; iTF_01424478; iTF_01424284; iTF_01070463; iTF_01070277; iTF_01067712; iTF_01067532;
80% Identity
iTF_01539710;