Xict036828.1
Basic Information
- Insect
- Xanthia icteritia
- Gene Symbol
- -
- Assembly
- GCA_949128155.2
- Location
- OY855862.1:7100243-7103104[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00051 0.055 15.1 0.4 2 23 147 168 146 168 0.97 2 19 0.0057 0.61 11.8 0.5 2 23 191 212 190 212 0.96 3 19 0.04 4.3 9.2 1.3 1 23 216 238 216 238 0.98 4 19 0.44 47 5.9 2.0 1 23 243 266 243 266 0.97 5 19 0.87 93 4.9 2.2 1 23 272 295 272 295 0.86 6 19 0.012 1.3 10.8 5.6 2 23 303 324 302 325 0.95 7 19 2.3e-05 0.0024 19.4 2.5 1 23 331 353 331 353 0.96 8 19 3.6e-06 0.00039 21.9 0.7 1 23 359 381 359 381 0.99 9 19 0.057 6.1 8.7 0.6 1 14 387 400 387 401 0.93 10 19 0.7 75 5.2 0.3 3 23 472 493 470 493 0.90 11 19 0.018 2 10.2 0.2 2 23 519 541 518 541 0.93 12 19 0.0014 0.15 13.7 0.6 2 23 564 585 563 585 0.97 13 19 0.0014 0.15 13.7 0.0 1 23 589 611 589 611 0.98 14 19 2e-05 0.0022 19.5 1.9 1 23 616 639 616 639 0.98 15 19 0.27 29 6.6 0.4 2 23 647 669 646 669 0.94 16 19 0.00021 0.022 16.4 2.2 2 23 677 699 676 699 0.96 17 19 2.3e-05 0.0025 19.3 2.3 1 23 705 727 705 727 0.98 18 19 3.5e-05 0.0038 18.8 0.6 1 23 733 755 733 755 0.99 19 19 0.00011 0.011 17.3 4.4 1 23 761 784 761 784 0.97
Sequence Information
- Coding Sequence
- ATGAATGCATCGAATAAAATCGTACTTTTCTTTATAGGTCTACCTCAAGCAGATACAGTCGCAATTAAAATAGAAGTTGACCAACCAGATGAAGCTAAGAAAGGAGAAATTACACAACCGACAATTGCTGGTATGAGTGTGGCAAATCCTAAAGCAGTAAGATCGTCCTGCAAAGCTCCTATAGTGTCTAAAGGATACAGTGCTGAAATTAACAAGCATAAAACGAATATTATAGAAATAATGCGTTGGTCTAACGCTACACCAATAAGACTTTGGGGAGATATGGGTTACATGTGTTGTCACTGTGAAGACCAATACTTAGACCCGGTAGATCTCAAAACACACACCCTACAAGCCCATAAGGACGTTACCAAAGCCTTCTTCATAAAAAACATGAGCATGTACAATTACATCATCAAATTAGATATCACTGATTTGCAGTGCAACATATGTAATAAAAGTATCGACACTACTGAAGAATTAATGGAACACTTGAAGAAACACAAGAAAATTATACATACTGACATCAAAAATCACATCATCCCTTTCAAGTTTAGCACAAAAACtcttgaatgttttatttgcaagaatGTTTTCAACAAATTCAAGTTATTATTGATACATATGAATATACACTATAGGAACTATGTATGTGATATTTGCGATGCCGGTTACGTAAATTATTGTAGGCTTAAGCTTCATAAAACAACACACAAAACAGAAAATTTCAGCTGTTCTTCTTGCTCTATGAAGTTCGAAACATTGGCTAAGAGAAACATGCATGTAAAGACTAAGCATGCCAAAATTATTCGTCACAAATGTGGGTACTGCAAGGAAAGATTCAACGAATATAGGAAGAAGGAAGAACATCTAGTATCTGTACATGGACTGAATAAACAAAAGTCGAAATGCCAAGCGTGTGATAAAGAATTTGGTCACCGGAAACATTTAGCCGTGCACGTTAAAAGACACCATTTGATGGTAAGACCACACGCTTGTGAAGTATGTGAGAAGAAATTTTTCAGTTCAAGTGAGCTGAGAAATCATATGAGCAAGCATACAGGAGAGAAGCCTTATAAGTGTGAAATTTGTTTGAAGTCATATGGACAGTCCAGGACCTTAAAAGCACATATGAGGATTCATAACGATGATAAGCGTTTTAAATGCGAACGTTGTGGACAGGCCTTCGTTCAGAAATCCAGTCACGGACGGGGAACTAGAATAATCAAAATAGAAAAACCGACAAAAGCAACCGTTGAATTGAAGTTCATCTCAAATCTAACAACGAGAGACTCAAAAGCCATCCTAAAAGGCGCAATATCAGAAACTGTGAAGAACAAACTGaatctaaaaaatatattgctcAACTCTAATGCAAACCCAATTagatgtaaagatggtcaaggATATGGCTGTTCGTTCTGTCCGAAACAGTTTCTAGAGCCGACTGCTCTCAAGAAGCACTTTCTGGAGGAACATAACAATGACAAACTGATTAAGTACATGACCTCTAAGCTATTTGATCATGTCATCAAGCTAGATATAACATACTTGAATTGTGCTCTTTGTGACAAAGACGTCAAACATCTGGACGACCTTGTAGCACATCTGAAGGATGATCACAACAAGTCGATGTATCTAGACGCTAAAAGTCAAATCGTCCCGTTCAGATTCGACTCGCCCGAACTAAAATGTGTCATATGCTCCACAGAATACAGTTCATTCAAGCTTTTACAAGAACATATGAATTCCCATTTCGGTAATTATATTTGTGAAATATGTGGCGCAGGGTTTGTGACTGACAGACTCCTAGTAAGCCACGTCAAACGGCATGATAGCGGAGAGTATAAATGTGATCAATGCgataaaacttttacaaaccaGATTAAAATACGCGAGCACATAAAACGAACACATCTAGGTCAGAGCAAAAGAAACAAATGCAATTACTGCGCGGAAAGATTCGTTGATTACTGGAAGAAGATGGATCATATGGTGAAAGAGCATGGAATGCCCCCTGTCGTCCTTAAATGTTCCGCTTGTGAGCGAACTTTTAGTAACCAACGGTCCTTGTCACGACACACAAAGAAAGACCACCTTTTGGAGAGAAGGCACAAgtgtagcgaatgtgacatgaGATTCTATGGAAAGAGTGGTTTGCAGAAACACATGGCCAAGCATACGGGGCTGAGGCAATTCAGGTGTGAAGTTTGCTTAAAGGCCTATGGAAGGAAGAATACCCTAAGAGAGCATATGAGGATCCATGCGAATGATAAGAGATTCGCTTGCACTCACTGTGGCCAAGCGTTTGTCCAAAAGTGTAGCTGGCGGAGTCACATGCGTTCTAAACATGGAGAAGAAGTGTAA
- Protein Sequence
- MNASNKIVLFFIGLPQADTVAIKIEVDQPDEAKKGEITQPTIAGMSVANPKAVRSSCKAPIVSKGYSAEINKHKTNIIEIMRWSNATPIRLWGDMGYMCCHCEDQYLDPVDLKTHTLQAHKDVTKAFFIKNMSMYNYIIKLDITDLQCNICNKSIDTTEELMEHLKKHKKIIHTDIKNHIIPFKFSTKTLECFICKNVFNKFKLLLIHMNIHYRNYVCDICDAGYVNYCRLKLHKTTHKTENFSCSSCSMKFETLAKRNMHVKTKHAKIIRHKCGYCKERFNEYRKKEEHLVSVHGLNKQKSKCQACDKEFGHRKHLAVHVKRHHLMVRPHACEVCEKKFFSSSELRNHMSKHTGEKPYKCEICLKSYGQSRTLKAHMRIHNDDKRFKCERCGQAFVQKSSHGRGTRIIKIEKPTKATVELKFISNLTTRDSKAILKGAISETVKNKLNLKNILLNSNANPIRCKDGQGYGCSFCPKQFLEPTALKKHFLEEHNNDKLIKYMTSKLFDHVIKLDITYLNCALCDKDVKHLDDLVAHLKDDHNKSMYLDAKSQIVPFRFDSPELKCVICSTEYSSFKLLQEHMNSHFGNYICEICGAGFVTDRLLVSHVKRHDSGEYKCDQCDKTFTNQIKIREHIKRTHLGQSKRNKCNYCAERFVDYWKKMDHMVKEHGMPPVVLKCSACERTFSNQRSLSRHTKKDHLLERRHKCSECDMRFYGKSGLQKHMAKHTGLRQFRCEVCLKAYGRKNTLREHMRIHANDKRFACTHCGQAFVQKCSWRSHMRSKHGEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00123579;
- 90% Identity
- iTF_00173453; iTF_00906395;
- 80% Identity
- -