Acen058030.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- -
- Assembly
- GCA_905333075.2
- Location
- HG995396.1:7835472-7838238[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0019 0.3 13.4 0.3 2 23 147 169 146 169 0.95 2 19 0.048 7.4 9.0 1.6 2 23 192 213 191 213 0.96 3 19 0.059 9.2 8.7 0.7 1 23 217 239 217 239 0.97 4 19 1.4 2.1e+02 4.4 2.7 1 23 244 267 244 267 0.96 5 19 0.017 2.6 10.5 2.1 1 23 273 296 273 296 0.95 6 19 0.003 0.46 12.8 3.2 2 23 304 326 303 326 0.96 7 19 4.9e-06 0.00075 21.6 2.3 1 23 332 354 332 354 0.96 8 19 0.00063 0.098 14.9 0.5 1 23 360 382 360 382 0.99 9 19 0.0053 0.83 12.0 1.3 1 21 388 408 388 409 0.92 10 19 0.77 1.2e+02 5.2 0.3 3 23 476 497 474 497 0.90 11 19 0.02 3.1 10.2 0.2 2 23 523 545 522 545 0.93 12 19 0.0018 0.28 13.5 0.6 2 23 568 589 567 589 0.97 13 19 0.0015 0.24 13.7 0.0 1 23 593 615 593 615 0.98 14 19 2.2e-05 0.0034 19.5 1.9 1 23 620 643 620 643 0.98 15 19 0.29 45 6.5 0.4 2 23 651 673 650 673 0.94 16 19 6.5e-05 0.01 18.0 2.2 2 23 681 703 680 703 0.96 17 19 0.00021 0.032 16.5 2.4 1 23 709 731 709 731 0.98 18 19 3.9e-05 0.006 18.8 0.6 1 23 737 759 737 759 0.99 19 19 0.00022 0.035 16.4 2.7 1 23 765 788 765 788 0.97
Sequence Information
- Coding Sequence
- ATGAATGCATCAAATAAAGTCGTACTTTTCTTTATAGGTAAACCTCAAGCAGATACAGTCGCAATTAAAATAGAAGTCGACCAACCAGATGAAGCTAAGAAAGAAGAAATTACACAACCGACAATTGCTGGTATGAGTGTGGCAAACCGTAAAGTAGCAACATCGTCCTGCGCACCTCCTATAGTGACTAGAGGGTATAGTGCTGAAATTAACAAGCATAAAACGAATATTATAGAAATAATGCGTTGGTCCAACGCTACACCAATAAAACTTTGGGGAGATATGGGTTACATGTGTTGTTACTGCGAAGACCAATACTTAGAGCCGACAGATCTCAAGACACATACTCTGCAAGCCCATGAGGACGTTACCCACGCCTACTTCATAAAAAACATGAGCATGTACAATTACATCATCAAATTAGACATCACTGGTTTGCAGTGTAAGATATGTAATAAAAGTATCGACACCACTGAAGAATTAATGGATCACTTGAAGAATgaacacaaaaaaattatacataCTGACATCAAAAATCACATAGTACCTTTCAAGTTTACCACAAAAGATCTCGAATGTTTCATTTGCAAGAATGTTTTccataaattcaaattattactGATACATATGAATATACACTACAGGAACTATGTATGTGATATATGTGATGCTGGTTACGTAAATTACTGTAGGCTTAAGCTACATAAATCCATACACAAtactgaaaatttcaactgttcaTCTTGCTCTATGAAGTTCGAAACATTGACCAAGAGAAACCTGCATGTAAAGACTAAGCATGCCAAAATTATTCGTCACAAATGTGGGTACTGTAAAGAAAGATTCAGCGATTACAGAAAGAAGGAAGCTCATCTGATATCTGTACATGgactgcaaaaacaaaaatcgAAATGCCAAGCGTGTGATAAAGAATTTGATCACCGGAAACATTTAGCCGTGCATGTTAAAAGAGACCATTTGATGGTAAGACCACACGCTTGTAAAGTGTGTGAGAAGACTTTTTTTACACCAAGTGAACTGAGAAATCATATGAGCAAGCATTCAGGAGAGAAGCCTTATAAGTGTGAAATTTGTCTAAAGTCTTATGGACAGTCGAGGATACTAAAAGAACATATGAGGATTCATAACGATGATAAGCGTTTTAAATGCGAACTTTGTGGACAGGCTTTCGTTCAGAAATCCAGCTGGAAATGTCACAGGCGGGGAACTAGGATAATCAAAATAGAAAAACCGACAAAAGCAACCGTTGAATTGAAGTTCATCTCAAAACTAACAACGAAAGACCCAAATGCCATCCTAAAAGGCTCAATATCAGAAACTGTGAAGAACAAAATgaatctaaaaaatatattgctCAACTCTAACGCAAACCCAATCagatgtaaagatggtcatggATATGGCTGTTCGTTCTGTCCAAAACAGTTTCTGGAGCCGACTGCCCTCAAGAAGCACTTTCTGGAAGAACATAACAATGATAAACTAATAAAgtacatgaccgctaagctatTTGATCACGTCATCAAGCTAGATATAACGTACTTAAATTGTGCTCTTTGCGACAAAGACGTCAAACATTTGGACGACCTTGTAGCACATCTGAAGGACGAGCACAACAAGTCGATGTATCTAGACGCTAAAAGCCAAATCGTCCCGTTCAGATTCGACTCGCCCGAATTAAAATGTGTCATGTGCTCCGTAGAATTCAGTTCATTCAAACTTTTACAAGAACATATGAATTCACATTTCGGTAATTATATTTGTGAAATATGTGGAGCAGGGTTTGTCACTGACAGACTCCTAGTAAGCCATGTCAAACGGCATGATAGCGGAGAGTATAAATGCGATCAATGCGAtaaaacttttacaaatcaGATTAAAATACGCGAGCACATAAAACGAACACATCTAGGTCAGAGCAAGAGAAACAAATGCAATTACTGCGCGGAAAGATTCGTTGATTACTGGAAGAAGATGGATCATATGGTGAAAGAGCATGGAATGCCCCCGATCGTCCTTAAATGTTCCGCTTGTGACCGAACTTTTAGTAACCAACGGTCCTTATCACGGCACACAAAGAAAGATCACCTTCTGGAGAGAAGGCACAAGTGTAGTGAATGTGAAATGAGATTCTTTGGAAAGAGTGGTTTGCAGAAACACATGGCCAAGCACACGGGGCTGAGGCAGTTCAGATGTGAAGTTTGCTTAAAGGCTTATGGAAGGAAGAACACGCTAAGAGAGCATATGAGGATTCATGCGAATGATAAGAGATTCGCTTGCACTCGCTGTGGCCAAGCGTTCGTCCAGAAGTGTAGCTGGCGGAGTCACATGCGTTCTAAACACGGAGAAGAAGTATAA
- Protein Sequence
- MNASNKVVLFFIGKPQADTVAIKIEVDQPDEAKKEEITQPTIAGMSVANRKVATSSCAPPIVTRGYSAEINKHKTNIIEIMRWSNATPIKLWGDMGYMCCYCEDQYLEPTDLKTHTLQAHEDVTHAYFIKNMSMYNYIIKLDITGLQCKICNKSIDTTEELMDHLKNEHKKIIHTDIKNHIVPFKFTTKDLECFICKNVFHKFKLLLIHMNIHYRNYVCDICDAGYVNYCRLKLHKSIHNTENFNCSSCSMKFETLTKRNLHVKTKHAKIIRHKCGYCKERFSDYRKKEAHLISVHGLQKQKSKCQACDKEFDHRKHLAVHVKRDHLMVRPHACKVCEKTFFTPSELRNHMSKHSGEKPYKCEICLKSYGQSRILKEHMRIHNDDKRFKCELCGQAFVQKSSWKCHRRGTRIIKIEKPTKATVELKFISKLTTKDPNAILKGSISETVKNKMNLKNILLNSNANPIRCKDGHGYGCSFCPKQFLEPTALKKHFLEEHNNDKLIKYMTAKLFDHVIKLDITYLNCALCDKDVKHLDDLVAHLKDEHNKSMYLDAKSQIVPFRFDSPELKCVMCSVEFSSFKLLQEHMNSHFGNYICEICGAGFVTDRLLVSHVKRHDSGEYKCDQCDKTFTNQIKIREHIKRTHLGQSKRNKCNYCAERFVDYWKKMDHMVKEHGMPPIVLKCSACDRTFSNQRSLSRHTKKDHLLERRHKCSECEMRFFGKSGLQKHMAKHTGLRQFRCEVCLKAYGRKNTLREHMRIHANDKRFACTRCGQAFVQKCSWRSHMRSKHGEEV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00123579;
- 90% Identity
- iTF_01526325;
- 80% Identity
- -