Llea025462.1
Basic Information
- Insect
- Lithophane leautieri
- Gene Symbol
- -
- Assembly
- GCA_949152455.1
- Location
- OX424487.1:4729873-4732621[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0027 0.21 12.8 0.1 2 23 147 168 146 168 0.96 2 19 2.4 1.9e+02 3.5 1.3 2 23 191 212 190 212 0.95 3 19 0.028 2.2 9.6 1.1 1 23 216 238 216 238 0.98 4 19 0.83 65 5.0 0.9 2 23 244 266 243 266 0.95 5 19 2.6 2.1e+02 3.4 1.9 1 23 272 295 272 295 0.94 6 19 0.0009 0.07 14.3 2.6 2 23 303 325 302 325 0.96 7 19 0.00025 0.019 16.1 0.9 1 23 331 353 331 353 0.96 8 19 0.00067 0.052 14.7 1.8 1 23 359 381 359 381 0.99 9 19 0.042 3.2 9.1 0.2 1 19 387 405 387 408 0.87 10 19 1.6 1.2e+02 4.1 0.5 3 23 475 496 473 496 0.90 11 19 0.021 1.6 10.0 0.1 2 23 522 544 521 544 0.93 12 19 0.00033 0.026 15.7 0.7 2 23 567 588 566 588 0.97 13 19 0.0014 0.11 13.7 0.0 1 23 592 614 592 614 0.98 14 19 9.7e-06 0.00075 20.5 3.6 1 23 619 642 619 642 0.98 15 19 0.027 2.1 9.6 0.4 2 23 650 672 649 672 0.94 16 19 0.0004 0.031 15.4 1.6 2 23 680 702 679 702 0.95 17 19 0.00018 0.014 16.5 2.4 1 23 708 730 708 730 0.98 18 19 3.4e-05 0.0027 18.8 0.6 1 23 736 758 736 758 0.99 19 19 0.0001 0.008 17.3 4.4 1 23 764 787 764 787 0.97
Sequence Information
- Coding Sequence
- ATGAATGCATCAAATAAAGTCGTACTTTTCTTTATAGGTGAACCTCAAGCAGATACAGTCGCAATTAAAATAGAAGTCGACCAACCAGATGAAGCTAAGAAAGGAGAAATTACACAACCAGCCACCATTGCTGGTATGAGTACAGCAAACCCTAAAGCAGCAATATCTTCCTGCAAACCTATAGTGTCTAGAGGGTATAGTGCTGAAATTAACAAGCATAAAACGAATATTATAGAAATAATGCGTTGGTCCAACGCTACACCAATAAAACTTTGCGGAGATATGGGTTACTTGTGTTGTCACTGTGAAGACCAATACTTAGACCCCGCAGATCTCAAGACACACACCCTACAAGCCCATCAGGACGTTACCAAAGCCTACTTCATAAAAAACATGAGCATGTACAATTACATCATCAAGTTAGACATCACTGATTTGCAGTGCAAGATATGTAATAAAAGTATCGACACTATTGAAGAACTAATGGACCACTTGAAGGAACACAAGAAAATAATACATACTGACATCAAAAATCACATAGTCCCTTTCAAGTTTAGCACAAAATCCCTTGAATGTTTCATCTGCAAGAATGTTTTccacaaattcaaaatattattgataCATATGAATATCCACTATAGGAACTATGTATGTGATATCTGCGATGCCGGTTACGTAAATTACTGTAGGCTTAAGTTACATAAATCCACACACAAAACTGGAAATGTTAGCTGCTCATCATGTTCTATGAAGTTCGAAACATTGGCTCAAAGAAACCTGCATGTAAAGTCTAAGCATGCCAATCTTATTCGTCACAAATGTGGGTACTGTATGGAAAGGTTCAACGATTATAGGAAGAAAGAAGAACATCTGATATCTGTTCATggaatgaaaaaacaaaagttgAAGTGCCAAGCGTGTGATAAAGAATTTGATCACCAGAAACATTTAGCTGTGCACGTCAAAAGAGACCATTTGATGTTGAGACCGCACGCTTGTGAAGTGTGTGAGATGAAATTTTTCACTCCATGGGAGCTGAGAAATCACATGAGCAAGCATACAGGAGAGAAGCCTTATAAGTGTGAAATTTGTTTTAAGTCTTTTGGACAGACGAGGATCTTAAAACAACATATGAGTACTCATAACGATGATAAACCTTTTAAATGCGAACGTTGTGGACAGGCTTTCGTTCAGAAATTCCGCTGGAGAGGTCACGGACGGGGAACTagaataatcaaaatagaaAAACCGACAAAAGCAACCGTTGAATTGAAGTTCATCTCAAATCTAACACCGAGAGAATCAAATGCCATCCTAAAAGGCTCAATATCAGAAACTGTGAAGAACAAACTGaatctaaaaaatatattgctcAACTCTAACGCAAACCCAATAagatgtaaagatggtcaaggCTATGGCTGTTCGTTCTGTTCAAAACAGTTTCTGGAGCCGACTGCTCTCAAGAAGCACTTTCTGGAAGAACATAACAATGACAAACTGATAAAGTACATGACCTCTAAGCTATTTGATCATGTCATCAAGCTAGACATAACTTACTTGAATTGTGCTCTTTGTGACAAAGACGTCAATCATTTAGACGACCTTATAGCACATCTGAAGGACGAACACAACAAGTCGATGTATCTAGACGCTAAAAGCCAAATCGTCCCGTTCAGATTTGACTCACCCGAACTGAAATGTGTCATATGCTCCACAGAATTCAGTTCATTCAAACTTTTACAAGAACATATGAATTCACATTTCGGTAATTATATTTGTGAAATATGTGGAGCAGGGTTTGTGACTGACAGACTCCTTGTAAGCCACGTCAAACGGCATGATAGCGGAGAGTATAAATGTGATCACTGCGATAAAACTTTTACAAACCAGATTAAAATACGCGAGCATATAAGACGAACACATCTAGGTCAGAGCAAGAGGAATAAATGCAATTACTGCCCGGAAAGATTCGTTGATTACTGGAAGAAGATGGATCATATGGTGAAAGAGCATGGAATGCCTCCTGTCGTCCTTAAATGTGCCGCTTGTGAGCGAACATTTACTAACCAAAGGTCCTTATCACGACACACGAAGAAAGATCACCTTTTGGAGAGAAGACACAAGTGTAGCGAATGTGAGATGAGGTTCTTTGGAAAGAGTGGTTTGCAGAAACACATGGCCAAGCATACAGGGCTGAAGCAGTTCAGGTGTGAAGTTTGCTTAAAGGCATATGGAAGGAAGAATACGCTCAGAGAGCATATGAGGATCCATGCGAATGATAGGAGATTCGCTTGCACTCATTGTGGCCAAGCGTTCGTCCAAAAGTGTAGCTGGCGGAGCCACATGCGTTCGAAACATGGAGAAGAAGCATAA
- Protein Sequence
- MNASNKVVLFFIGEPQADTVAIKIEVDQPDEAKKGEITQPATIAGMSTANPKAAISSCKPIVSRGYSAEINKHKTNIIEIMRWSNATPIKLCGDMGYLCCHCEDQYLDPADLKTHTLQAHQDVTKAYFIKNMSMYNYIIKLDITDLQCKICNKSIDTIEELMDHLKEHKKIIHTDIKNHIVPFKFSTKSLECFICKNVFHKFKILLIHMNIHYRNYVCDICDAGYVNYCRLKLHKSTHKTGNVSCSSCSMKFETLAQRNLHVKSKHANLIRHKCGYCMERFNDYRKKEEHLISVHGMKKQKLKCQACDKEFDHQKHLAVHVKRDHLMLRPHACEVCEMKFFTPWELRNHMSKHTGEKPYKCEICFKSFGQTRILKQHMSTHNDDKPFKCERCGQAFVQKFRWRGHGRGTRIIKIEKPTKATVELKFISNLTPRESNAILKGSISETVKNKLNLKNILLNSNANPIRCKDGQGYGCSFCSKQFLEPTALKKHFLEEHNNDKLIKYMTSKLFDHVIKLDITYLNCALCDKDVNHLDDLIAHLKDEHNKSMYLDAKSQIVPFRFDSPELKCVICSTEFSSFKLLQEHMNSHFGNYICEICGAGFVTDRLLVSHVKRHDSGEYKCDHCDKTFTNQIKIREHIRRTHLGQSKRNKCNYCPERFVDYWKKMDHMVKEHGMPPVVLKCAACERTFTNQRSLSRHTKKDHLLERRHKCSECEMRFFGKSGLQKHMAKHTGLKQFRCEVCLKAYGRKNTLREHMRIHANDRRFACTHCGQAFVQKCSWRSHMRSKHGEEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00123579;
- 90% Identity
- iTF_01526325;
- 80% Identity
- -