Vger003336.1
Basic Information
- Insect
- Vespula germanica
- Gene Symbol
- br
- Assembly
- GCA_905340365.1
- Location
- HG996530.1:12356069-12358170[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-07 0.00015 21.1 0.0 2 38 200 236 199 242 0.84 2 4 1.6e-11 2.1e-08 33.4 0.0 5 39 253 286 250 293 0.85 3 4 0.1 1.4e+02 2.0 0.0 21 34 320 333 306 338 0.80 4 4 2.9e-13 3.8e-10 39.0 0.1 4 39 364 399 361 404 0.93
Sequence Information
- Coding Sequence
- ATGTGCGAAGTTGCTGGTCAAAATGAAATTAACCAGAGTTATTGTTTCAAATGGAATGATTATCAGAATCATTTATCTGATGTAATTCGTCAATTATTGGAAGATGATTGTATGGTGGATGTTACACTTTCAGCAGCAGGAGAACGTATTCATGCTCATCGCATTGTTCTATCAGCCTGCAGCACATTATTTCAAGAAGTTCTGAGTCAGGTAAATGAAGATCATCCTACTATAATATTAAGTGATATATCTGCTCAggatataaaatcaataattgaATTTACCTATCATGGAGAAGTACGTATTCcagtagaaaatattaatagcgTATTGGATGCTGCACggtcattaaaaatatgtggTCTTATCGAGATTGATGATTTAGAAGAAAGTGATACTGTTATTGACAATAAAGATGTGACTGAAGATAATATTGATCCTATAcctgaaataaatgaaacagaTGAAAATGAATTGAACACATTAAGTGATAAATATGAAGTAggaaatttaaaagaagaggaaaaaacgaCAGATAATTcccttttaaataaaagaaggaaaagaagacgCGATGcaattaaaagagaatatagCGACGATATGTTGGCATCAGCTATTAATGATTTAAGACTTGGCCAAACTTTAATAGAAGCAGCTACAAAACATAACATACCACGTTCGACATTATACATGCGTGCTAAAGCATTGGGTATACATTTAAATGCATCTAGGAATGAATATCCTGCAGAATGTATGAAAGCAGCGATTAATGCTGTAATTGGTGGTTCTAGTCTACAACATGCATCAGAAATGTACAGTATTCCTAAAACTGTATTATGGAGACGTATACAAAAGGAAGGCTATCAAATTTTACGTTCGGAAATGAAAAGATCTTATGGTTCGGATAAACGTGAAGCAGCTGTTAAAGCTttagaaagaggagaaaatttAACTAAAGTTGCTCTTGAATTTAAaATACCCAAGACAACATTATTTAGGGATAAAGCAAGATTAGTAGATGAAGGCAAGTTGCCACTTTCATTTTGGAAAAAACGTAAAACAGAAAACGAGGAGTTGAAAAAATCGAGATTAGAAGAAGCAGTAGCTGCTTGTAAAGGAGGGAAAATGTCTCAAGCAGCGGCATCTATGGCTTATGATATACCAAAGACTACGATATGGAGGCGGTTACAACAGGATAGTAAAAAATCGGAGAGATtaccaaataaaaaaaagcaacaaaGGACCATTGAAACAACATCAAATATGACAGATAAACCAAAGCAAGAAACCTCAGATTTTACATATTGCGAggtTGCATCAGAAATTCCAGTAACATATATAGATGAAAATAGCATACCAGAGGATtctgttattattttaacaacaGAGGATATGGATGGTCTTAATTTAGAAGAAGGAAGACAAATCATTGTAAATTCTGTATCAAACCATGAATATATTccatgtaatataaatatagaagatAATTCTAATTATACACAACCAGAAAGTTAA
- Protein Sequence
- MCEVAGQNEINQSYCFKWNDYQNHLSDVIRQLLEDDCMVDVTLSAAGERIHAHRIVLSACSTLFQEVLSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRIPVENINSVLDAARSLKICGLIEIDDLEESDTVIDNKDVTEDNIDPIPEINETDENELNTLSDKYEVGNLKEEEKTTDNSLLNKRRKRRRDAIKREYSDDMLASAINDLRLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASEMYSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMAYDIPKTTIWRRLQQDSKKSERLPNKKKQQRTIETTSNMTDKPKQETSDFTYCEVASEIPVTYIDENSIPEDSVIILTTEDMDGLNLEEGRQIIVNSVSNHEYIPCNINIEDNSNYTQPES*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_01512929; iTF_01512105; iTF_01514922; iTF_01513584; iTF_01512753; iTF_01090098; iTF_01514259; iTF_01089911; iTF_01512282; iTF_01514746; iTF_01514075;
- 80% Identity
- iTF_01513584;