Basic Information

Insect: Odynerus spinipes
Gene Symbol: br
Assembly: GCA_032403825.1
Location: JAIFRP010000006.1:3778708-3780790[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.5 1.4e+03 -1.2 0.5 33 45 183 196 180 196 0.81

2 5 3.2e-07 0.0003 20.2 0.0 2 38 200 236 199 242 0.82

3 5 6.4e-11 6e-08 32.0 0.0 5 39 253 286 250 293 0.85

4 5 0.15 1.4e+02 2.0 0.0 21 34 320 333 306 338 0.80

5 5 4.2e-13 3.9e-10 39.0 0.1 4 39 364 399 361 404 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.5	1.4e+03	-1.2	0.5	33	45	183	196	180	196	0.81
2	5	3.2e-07	0.0003	20.2	0.0	2	38	200	236	199	242	0.82
3	5	6.4e-11	6e-08	32.0	0.0	5	39	253	286	250	293	0.85
4	5	0.15	1.4e+02	2.0	0.0	21	34	320	333	306	338	0.80
5	5	4.2e-13	3.9e-10	39.0	0.1	4	39	364	399	361	404	0.93

Sequence Information

Coding Sequence: ATGTGCGAAGTTGCTAGTCAACCTGAAATTAATCAGAGTTATTGTTTCAAATGGAACGATTATCAGAATCATTTGTCTGATGTAGTTCGGCAACTCTTGGAAGATGATTGTATGGTGGATGTTACGCTTTCTGCGGCAGGAGAGCGTATTCATGCGCATCGCATTGTTCTATCCGCTTGCAGTACATTATTTCAAGAGGTGCTGAGTCAAGTAAATGAAGATCACCCTACTATAATATTAAGTGACATATCTGCTCAGGATATAAAGTCAATAATTGAATTTACGTATCATGGAGAAGTACGTATTCCAGTAGAGAATATTAATAGTTTATTGGACGCTGCacgttctttaaaaatatgtgGTCTTATAGAgATCGACGATCTGGATGAAAGTGATACCGTTATCGATGGTAAAGATGTAGTGGAAGACAATATCGAACCCATGcctgaaataaatgaaacagaTGAAAATGTGATAAACACGTTAGATGACAAATGTGAAGCTGAAAATTTGGAagcagaagagaaaaagacagataATTCCCTTTTgagcaaaagaagaaagagaagacgagaggcaatgaaaagagaatataGCGACGATATGTTAACCTCGGCTATTAATGATTTAAGACTCGGTCAAACTTTAATCGAAGCAGCTACAAAACATAACATACCCAGATCAACATTGTACATGCGTGCGAAGGCATTGGGTATTCATTTAAATGCATCTAGAAACGAATATCCTGCTGAATGTATGAAAGCAGCAATAAATGCTGTAATCGGTGGCTCTAGTCTACAACATGCATCAGAAATGTTCAGTATTCCTAAGACTGTATTATGGAGACGTATACAAAAAGAGGGTTATCAAATTTTACGTTCAGAAATGAAAAGATCGTATGGTTCTGATAAACGAGAAGCAGCTGTTAAAGCTTTGGAACGAGGGGAAAATCTGACTAAAGTTGCTCTTGAATTCaagATACCTAAAACAACATTATTTAGAGATAAAGCAAGATTGGTAGACGAAGGCAAGTTACCGCTTTCATTTTGGAAAAAACGTAAAACTGAGAATGAAGAGTTGAAGAAATCCAGATTGGAAGAAGCAGTAGCAGCTTGTAAAGGAGGAAAGATGTCTCAAGCAGCAGCATCTATGGCTTATGATATACCAAAGACTACAATATGGAGGCGTTTGCAACAAGATAGTAAAAAGTCCGAAAgattagtaaataaaaaaaagcagcaGCGTGCTATCGAGACGACATCAACTACGACGGAGAAACCAAAGCAAGAAGCAACAGACTTTACATATTGCGagGTTACATCAGAAATCCCAATAACATATATAGATGAAAATAGTATACCAGAAGActctgttattattttaacaacaGAGGATATGGATGGCCTTAACTTAGAAGAAGGAAGacaaattattgtaaattccGTATCAGGTCACGAATACGTCccatgtaatataaatatcgaaGATAATTCCACCTACACGCAACCAGAAAGTTAG
Protein Sequence: MCEVASQPEINQSYCFKWNDYQNHLSDVVRQLLEDDCMVDVTLSAAGERIHAHRIVLSACSTLFQEVLSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRIPVENINSLLDAARSLKICGLIEIDDLDESDTVIDGKDVVEDNIEPMPEINETDENVINTLDDKCEAENLEAEEKKTDNSLLSKRRKRRREAMKREYSDDMLTSAINDLRLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMAYDIPKTTIWRRLQQDSKKSERLVNKKKQQRAIETTSTTTEKPKQEATDFTYCEVTSEIPITYIDENSIPEDSVIILTTEDMDGLNLEEGRQIIVNSVSGHEYVPCNINIEDNSTYTQPES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118108;
90% Identity: iTF_01513390;
80% Identity: iTF_01090098;