Vman000645.1
Basic Information
- Insect
- Vespa mandarinia
- Gene Symbol
- br
- Assembly
- GCA_014083535.1
- Location
- JACHAV010000024.1:2157778-2160312[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.2 4.5e+03 -3.0 0.2 33 45 183 196 181 196 0.78 2 5 6.4e-08 0.00013 21.1 0.0 2 38 200 236 199 242 0.84 3 5 2.4e-11 5e-08 32.0 0.0 5 39 253 286 250 293 0.85 4 5 0.057 1.2e+02 2.0 0.0 21 34 320 333 306 338 0.80 5 5 1.6e-13 3.3e-10 39.0 0.1 4 39 364 399 361 404 0.93
Sequence Information
- Coding Sequence
- ATGTGCGAAGTTGCTGGTCAAAATGAAATTAACCAGAGTTATTGTTTCAAATGGAATGATTATCAGAATCATTTATCTGATGTAATTCGTCAATTATTGGAAGATGATTGTATGGTGGATGTTACACTTTCTGCAGCAGGAGAACGTATTCATGCTCATCGCATTGTTCTATCAGCTTGCAGCACGTTATTTCAAgAAGTTCTGAGTCAAGTTAATGAGGATCATCCTACTATAATATTAAGTGATATATCTGCTCaggatataaaatcaataattgaaTTTACTTATCATGGAGAAGTACGTATTCcagtagaaaatattaatagcgTATTGGATGCTGCACGgtcattaaaaatatgtgGACTTATCGAGatTGATGATCTTGACGAAAGTGATAATGTTATTGACAGTAAAGATGTaactgatgataatattgactcTATACCTGAAATTAATGAAACAGATGAAAGTGAGTTAAATACATTAAGTGATAAATGTGAAATAGAGAATTTAAAGGCCGAAGAAAAAACGACAGATAACtccattttaaataaaaaaaggaaaagaagacgtgaagcaattaaaagagaatatagCGATGACATGTTGGCATCAGCTATTAATGATTTAAGACTTGGCCAAACTTTAATAGAAGCAGCTACAAAACATAACATACCACGTTCGACATTATACATGCGTGCTAAAGCATTGGGTATACATTTAAATGCATCTAGGAATGAATATCCTGCTGAATGTATGAAAGCAGCAATAAATGCTGTAATCGGAGGTTCTAGTCTACAACATGCATCAGAAATGTTTAGTATTCCTAAAACTGTATTATGGAGACGTATACAAAAGGAAGGATATCAAATATTACGTTCAGAAATGAAAAGATCTTATGGTTCAGATAAACGTGAAGCAGCTGTTAAAGCTttagaaagaggagaaaatttAACTAAAGTTGCTCTTGAATTTAAgATACCTAAGACAACATTATTTAGGGATAAAGCGAGATTAGTTGACGAAGGCAAGTTGCCACTTTCATTTTGGAAAAAACGTAAAACAGAAAATGAGGAATTGAAAAAGTCAAGATTAGAAGAAGCAGTAGCTGCTTGTAAAGGAGGAAAAATGTCTCAAGCAGCAGCATCTATGGCTTATGATATACCAAAGACTACAATATGGAGGCGGTTACAACAAGATAGTAAAAAATCGGAAAGatcaacaaataaaaaaaagcaacaGAGGACCATTGAAACAACATCAAATATGGTAGATAAGCCAAAGCAAGAAACCTCAGATTTTGCATATTGCGAggtTGCATCAGAAATTCCAGTAACATATATAGATGAAAATAGCATACCAGAGGattctgttattattttaacaacaGAGGATATGGATGGTCTTAATTTAGAAGAAGGAAGACAAATCATTGTAAATTctgtATCAAGCCATGAATATATTccatgtaatataaatatagaagataattctaattatacacAACCAGAAAGTTAA
- Protein Sequence
- MCEVAGQNEINQSYCFKWNDYQNHLSDVIRQLLEDDCMVDVTLSAAGERIHAHRIVLSACSTLFQEVLSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRIPVENINSVLDAARSLKICGLIEIDDLDESDNVIDSKDVTDDNIDSIPEINETDESELNTLSDKCEIENLKAEEKTTDNSILNKKRKRRREAIKREYSDDMLASAINDLRLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMAYDIPKTTIWRRLQQDSKKSERSTNKKKQQRTIETTSNMVDKPKQETSDFAYCEVASEIPVTYIDENSIPEDSVIILTTEDMDGLNLEEGRQIIVNSVSSHEYIPCNINIEDNSNYTQPES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_01513390;
- 80% Identity
- iTF_01512929;