Vman010787.1
Basic Information
- Insect
- Vespa mandarinia
- Gene Symbol
- -
- Assembly
- GCA_014083535.1
- Location
- JACHAV010000032.1:653261-656475[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1 72 3.6 0.3 2 23 298 319 297 319 0.93 2 15 0.02 1.5 9.0 0.4 1 23 327 350 327 350 0.93 3 15 0.0033 0.24 11.4 2.1 1 23 356 378 356 378 0.97 4 15 0.063 4.5 7.4 5.3 1 23 461 483 461 483 0.93 5 15 0.0029 0.21 11.6 0.4 1 23 490 513 490 513 0.91 6 15 3.7e-05 0.0027 17.6 2.0 1 23 519 541 519 541 0.99 7 15 0.00028 0.02 14.8 2.9 1 23 547 569 547 569 0.98 8 15 4.2e-06 0.0003 20.6 1.8 1 23 575 597 575 597 0.98 9 15 0.0046 0.33 11.0 0.3 1 23 610 633 610 633 0.95 10 15 7.3e-05 0.0052 16.7 3.7 1 23 649 672 649 672 0.96 11 15 6.6e-06 0.00048 19.9 0.8 1 23 680 703 680 703 0.98 12 15 0.00045 0.033 14.2 0.7 1 23 709 731 709 731 0.97 13 15 0.00014 0.0099 15.8 4.9 1 23 737 759 737 759 0.98 14 15 0.01 0.74 9.9 6.1 1 23 765 787 765 788 0.96 15 15 0.0007 0.05 13.6 0.4 2 23 794 815 793 815 0.96
Sequence Information
- Coding Sequence
- atgttattgtGTCGTTTATGTGGTATAAACCTTCAAAACGGAAggcttaaaaatatatttgaagatTCGACAGatctaaaacaaaaaataatagacaCATTACCAATTaatatatctcCATTGGATGATGGGTCtaaatttgtatgtatatcctGTCATGACAAAGTTATTCTTTATCATAAGTTCATTCAAGAagttttaaaatatgaaagagaatTAGATAACGGAAAAAGTAATTGTTTTCATGAGTTtacaagaaatgaaaaagaacaaacagaTATATTTGCTAAGATTTGTAATGATACAGTATGCACATGTCCAAATTGTAATGTcgatttaatgatattattagttAGTAATCCACAAAACTGTGATTATAGTTTTCAAATTTCACTAGCAATTGTTGGTCATACTGAAAAAACTCACCCAACAAAAGAGCAAAATCTTCAAAACTTCGAAAAACCAATAGCGCTTAATATAAAACAAGACAATGTAAATCCACAAAACTGTATCAAATTAAAAGCAAATATGAATGGAGAAagtattgaaataaaagagattaatcgtaaaaatacATTGACATATAATATGATTGGTAAGGAAAATTCCTTAAATAGGACACAGAAAGatgtcaaaagaaaatttaagagaaatataaaatataaagaaacttCAGATTCTGTTAAGATTCCTAAATTAGAAGTAATTTATGAGCCATATTCTGAACTTGTAAATTGTAAGGATACAAATACATTAGTAAAATTAGAATCtacttatgataatattgtatggttcaattgtgaaaaaaactataaaaagCACGAAAGAATCATTAATAATGAGGATATTAAAACAGAAgacaaagataatataaaatcttgtCCAAGAATTGTATGTAATTTATGTGGTGCTCGATATCTTTCACAATCAAAATATGAATTTCATATGGAAAGACACAAATTTGATTGTAtggataaatatgtatgtactgtttgtaaaaaagaagcaagtaatgaaaatttattgtgggatcattattattatacacataAAAACTCACAACGTTTTATTTGCTTGGAatgtgataaattattttcaaaatatacaaGATTAAAGGGACatcaaaagaaacataaacaTTCTGGTATTCAGGAGATAAATGTCGATATTGGTAATGACTTAGATATTGATAATACACAGAAAGAACTTGCAGTAAAAATACAAGGAAAAACATTCACCAATTGTAATTTATgtggaaaattaatttttgatttagATCCAGATGCTATTAATGATTTGGTTACTTGTTCTTCTTGTGAAGATTCTACTCTTTCTTTAGTTGTAGATGGAAATGAAGCAAAAGTAATATCACCCCGTCAATATCATTGTTCCAAATGTCCTAAACATTTCGTACGTAAAGAAAGATTAGAATTTCACGAAATGCGAcacaatgaaaatatgaaagaatttatttgcAGTACTTGTGGTAAAGAGTTTAGTGcagaaaattctttatatgAGCATTATCTCTTTGTTCATAAGGGTGCAAGACCTTATGTTTGTGAATTATGTGGTAAGTCGTTTCAATTGAAAGCACGTCTACGAGAGCATCATCGTACTCATACCGGTGAAAGACCTTTTCAATGTGATGTGTGTGAACAAAAATGTACAACTAAAAATGCTTTAAGACTTCATAGAAAGATACATTTTTCTCATAACcgttatatttgtaatatttgtaataagtCATTtaggaagaaacaaaatatgaaTGAACATTTAGAAAAACATTGGAaacatgataaaaatatattattaccacaagtatttacatgCCCTATATGTATGGAGGATTTTCCAACATatagaatgttaaaatatCATATGATAGAAACCCACGAAATTAGTAATCAAGATCCAATTTTAATTGAACAAAAACCATGGTATGAATGTGAAGAGTGTcacgaaaaatttaaacatCAAATGTCCTTAAAGGCACACAAAGAACGAATACATGAGGGTAAAGTAGATCCTATATATCAATGTGATATTTGTAATACCTCTTATAGAGTAAAACaacttttaataaatcatataagaAGTAAACACAATGGTgaaaaacgatataaatgtGCACAGTGTGAGAAAGGTTTTAATGATACTAAATCTCTGTACAATCATGTTCTTCTACATACTGGTAAAAAACCATTTGTTTGCGAATATTGCAATATGAGTTTTAGACGTAAAGATTCGAGGGATCATCATCAAAGAAAGCATACAGGTGAATTACCTTATCAATGTCAGGATTGTGGAGAACATTTTGCTTCATACAATTATCGATCAAAGCATCGTAAACAGCATCATGATAAAGGTGATTTAGAATGTCCCGAATGtggagaaaaatgtaatgatcAACAAGAAATTAGAATTCATTTGAATAATCATCTAGGAGAAAAATTAAAGCAGTTGCAAAATGTCTaa
- Protein Sequence
- MLLCRLCGINLQNGRLKNIFEDSTDLKQKIIDTLPINISPLDDGSKFVCISCHDKVILYHKFIQEVLKYERELDNGKSNCFHEFTRNEKEQTDIFAKICNDTVCTCPNCNVDLMILLVSNPQNCDYSFQISLAIVGHTEKTHPTKEQNLQNFEKPIALNIKQDNVNPQNCIKLKANMNGESIEIKEINRKNTLTYNMIGKENSLNRTQKDVKRKFKRNIKYKETSDSVKIPKLEVIYEPYSELVNCKDTNTLVKLESTYDNIVWFNCEKNYKKHERIINNEDIKTEDKDNIKSCPRIVCNLCGARYLSQSKYEFHMERHKFDCMDKYVCTVCKKEASNENLLWDHYYYTHKNSQRFICLECDKLFSKYTRLKGHQKKHKHSGIQEINVDIGNDLDIDNTQKELAVKIQGKTFTNCNLCGKLIFDLDPDAINDLVTCSSCEDSTLSLVVDGNEAKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMKEFICSTCGKEFSAENSLYEHYLFVHKGARPYVCELCGKSFQLKARLREHHRTHTGERPFQCDVCEQKCTTKNALRLHRKIHFSHNRYICNICNKSFRKKQNMNEHLEKHWKHDKNILLPQVFTCPICMEDFPTYRMLKYHMIETHEISNQDPILIEQKPWYECEECHEKFKHQMSLKAHKERIHEGKVDPIYQCDICNTSYRVKQLLINHIRSKHNGEKRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNMSFRRKDSRDHHQRKHTGELPYQCQDCGEHFASYNYRSKHRKQHHDKGDLECPECGEKCNDQQEIRIHLNNHLGEKLKQLQNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01232582;
- 90% Identity
- iTF_01512357; iTF_01513675; iTF_01515020; iTF_01514359;
- 80% Identity
- -