Pcan006390.1
Basic Information
- Insect
- Polistes canadensis
- Gene Symbol
- -
- Assembly
- GCA_001313835.1
- Location
- NW:6369-10278[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0019 0.12 12.0 2.8 1 23 357 379 357 379 0.97 2 13 0.054 3.4 7.4 5.3 1 23 463 485 463 485 0.93 3 13 0.0025 0.16 11.6 0.4 1 23 492 515 492 515 0.91 4 13 5.8e-05 0.0036 16.8 2.1 1 23 521 543 521 543 0.98 5 13 0.00024 0.015 14.8 2.9 1 23 549 571 549 571 0.98 6 13 3.6e-06 0.00022 20.6 1.8 1 23 577 599 577 599 0.98 7 13 0.1 6.5 6.5 0.2 1 23 612 635 612 635 0.93 8 13 1.9e-05 0.0012 18.3 1.8 1 23 651 674 651 674 0.96 9 13 7.8e-06 0.00049 19.5 0.5 1 23 682 705 682 705 0.98 10 13 0.00039 0.024 14.2 0.7 1 23 711 733 711 733 0.97 11 13 0.00042 0.026 14.1 5.5 1 23 739 761 739 761 0.98 12 13 0.0018 0.11 12.1 4.1 1 23 767 789 767 790 0.96 13 13 0.0006 0.037 13.6 0.4 2 23 796 817 795 817 0.96
Sequence Information
- Coding Sequence
- ATGTTATTGTGTCGTTTATGTGGTACATACCTGCAAGACGGAAggcttaaaaatatatttgaagattCTACAGATCttaaacaaaagataatagaTACGTTACCAATTAATataTCTTCACTAGACAATGGTTCAAAGTTTATATGTTTGTCCTGTCACGATAAAGTTATTctttatcataaatttattcaagaagttttaaaatacgagaaagaattagataatgaagaaaatcattgttacgatttaataaacaacaaaaaagaacaaacagaCATATTCGCAAAGATTTATGGCGATACTGTATGCGTGTGCCCAAATTGTAATATcgatttaatgatattattagtTAGTAATCCACAAAACTGTGATTATAGTTTTCAAATATCTCTAGCAATCGTTGGTCATtccgataaaatttattctatgaaAGAGCAGAATTTACAAGTCTTTGAAAAACCTGTAGCACTTAATATCAAACAAGATAATGTAAACTCGCAAAACTATAACAAATCTAAAGCACATATGAGCGAAGaaagtattgaaataaaaaacaataatcgtAAGAGTACGTTGACGTACAATATGTTTggtaaagaaaattctttaaatagaaaagatgttaagaaaaaattgaagagaaatatagaatataaagaaactttaaatcctgttaaaattgataaattagaAGTAATTAACGAACAGTATCCTGAACTTGTAAATGGTAAAGGTACAAATACATTAGTAAAGCTGGAATCTAATGATAATATTCCATGGTTCAATAGAGAAGACGATTACAACTCGATTATTAATCAACAAcatgaaaaaatcattaataacgAGGATATCATAATGGAAGAcaacgataatataaaatcttcACCAAAAATAGTATGCAATTTATGCGGTGCTCAATATTTTTGTCAATCGAAATATGAATTTCATATGGAAAgacataaattaaattgtatggataaatatatatgcatcgtTTGTAGAAAAGAAGCGtgtaatgaaaatttgttgtgggatcattattattacacgcATAAAAGTTCGcaacattttatttgcatggaatgcaataaattattttccaaatataCGAAATTAAAGGGACATCAAAAGAAACACAACCATTTGAATTTTCAAGAAATTCATGTAGATACCGTTAATGACGATTTAGACATTGATAATACACAAGAAGAATTGTCGGAACAAACGCAAGGAAAAACATTTACTAATTGCAATCTATgtggaaaattaatttttgatttagATCCGGATGCTATCAACGATCTAGTAACTTGCTCTACTTGCGAAGATTCGACTCTTTCTTTAGTTGTAGATGGAAATGAAGCTAAAGTAATATCGCCTCGTCAATATCATTGTTCCAAATGTCCCAAACACTTTGTGCGCAAGGAAAGATTGGAATTTCATGAAATGCGGcacaatgaaaatatgaaagaatttatttgcAGTACTTGCGGTAAAGAATTTAGCGCAGAAAATTCATTATACGAACATTATCTTTTTGTACATAAGGGTGCAAGACCTTATATTTGTGAATTATGCGGTAAGTCTTTTCAATTAAAAGCACGTCTACGAGAGCATCATCGTACGCATACAGGTGAAAAACCGTTCCAATGCGACGTGTGCGAACAAAAATGTACGACTAAGAACGCATTAAGACTTCATAGGAAAATACACTTTTCTCATAATCGttacatttgtaatatatgtaataaatcgtttaggaaaaaacaaaatatgaacGAACATTTAGAAAAACATTGGAaacacgataaaaatatattattaccgaAGGTATTTACCTGTCCGATATGCATGGAAGGTTTCCCAACGTATAGAATGTTGAAATTTCATATGATAGAAAGTCACAAAATTAGTGATCAAGATCCGATTTTAATAGGACAAAAACCATTGTACGAATGTGAGGAATGTAACGAAAAGTTTAAACATCAAATGTCTTTAAAGGCGCACAAAGAACGAATACACGAAGGTAAAGTGGATCCCGTGTATCAATGTGATATCTGTAACATCTCTTACAAAGTTaaacaacttttaataaatcatataagaAGCAAGCACAATGGcgagaaaagatataaatgtgCTCAATGCGAGAAAGGTTTTAATGACACTAAATCTTTGTACAATCATGTTCTCCTACATACTGGTAAAAAACCGTTTGTTTGCGAATACTGCAATATGAGGTTTAGACGCAAAGATTCGAAGGATCATCATCAAAGAAAGCATACTGGTGAATTACCTTATCAGTGTCAGGATTGCGGAGAAAATTTTGCTACGTACAATTATCGATCAAAGCATCGTAAACAGCATCACGGCAAAGGCGATTTGGAATGTCCTGAATGTGGGGAAAAATGTAATGATCAACAAGAAATAAGAATTCATTTAAACAACCATTTAggtgaaaaattaaaacaattggaAAATGTCTAA
- Protein Sequence
- MLLCRLCGTYLQDGRLKNIFEDSTDLKQKIIDTLPINISSLDNGSKFICLSCHDKVILYHKFIQEVLKYEKELDNEENHCYDLINNKKEQTDIFAKIYGDTVCVCPNCNIDLMILLVSNPQNCDYSFQISLAIVGHSDKIYSMKEQNLQVFEKPVALNIKQDNVNSQNYNKSKAHMSEESIEIKNNNRKSTLTYNMFGKENSLNRKDVKKKLKRNIEYKETLNPVKIDKLEVINEQYPELVNGKGTNTLVKLESNDNIPWFNREDDYNSIINQQHEKIINNEDIIMEDNDNIKSSPKIVCNLCGAQYFCQSKYEFHMERHKLNCMDKYICIVCRKEACNENLLWDHYYYTHKSSQHFICMECNKLFSKYTKLKGHQKKHNHLNFQEIHVDTVNDDLDIDNTQEELSEQTQGKTFTNCNLCGKLIFDLDPDAINDLVTCSTCEDSTLSLVVDGNEAKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMKEFICSTCGKEFSAENSLYEHYLFVHKGARPYICELCGKSFQLKARLREHHRTHTGEKPFQCDVCEQKCTTKNALRLHRKIHFSHNRYICNICNKSFRKKQNMNEHLEKHWKHDKNILLPKVFTCPICMEGFPTYRMLKFHMIESHKISDQDPILIGQKPLYECEECNEKFKHQMSLKAHKERIHEGKVDPVYQCDICNISYKVKQLLINHIRSKHNGEKRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNMRFRRKDSKDHHQRKHTGELPYQCQDCGENFATYNYRSKHRKQHHGKGDLECPECGEKCNDQQEIRIHLNNHLGEKLKQLENV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01513675; iTF_01515020; iTF_01514359; iTF_01512996; iTF_01512357; iTF_01233850; iTF_01234551; iTF_01235223; iTF_01233206;
- 90% Identity
- iTF_01235223; iTF_01234551; iTF_01233850;
- 80% Identity
- -