Vger007580.1
Basic Information
- Insect
- Vespula germanica
- Gene Symbol
- -
- Assembly
- GCA_905340365.1
- Location
- HG996537.1:3644810-3647415[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6 3.7e+02 1.6 0.2 1 23 332 355 332 355 0.89 2 14 0.026 1.6 9.0 1.1 1 23 361 383 361 383 0.97 3 14 0.086 5.3 7.4 5.3 1 23 466 488 466 488 0.93 4 14 0.004 0.25 11.6 0.4 1 23 495 518 495 518 0.91 5 14 9.2e-05 0.0056 16.8 2.1 1 23 524 546 524 546 0.98 6 14 4.4e-05 0.0027 17.8 2.6 1 23 552 574 552 574 0.98 7 14 5.7e-06 0.00035 20.6 1.8 1 23 580 602 580 602 0.98 8 14 0.0058 0.35 11.1 0.2 1 23 615 638 615 638 0.95 9 14 0.0001 0.0061 16.7 3.7 1 23 654 677 654 677 0.96 10 14 2.2e-05 0.0013 18.7 0.4 1 23 685 708 685 708 0.98 11 14 0.00062 0.038 14.2 0.7 1 23 714 736 714 736 0.97 12 14 0.00019 0.012 15.8 4.9 1 23 742 764 742 764 0.98 13 14 0.011 0.68 10.2 6.3 1 23 770 792 770 793 0.96 14 14 0.00096 0.059 13.6 0.4 2 23 799 820 798 820 0.96
Sequence Information
- Coding Sequence
- ATGTTATTGTGTCGTTTATGTGGTATAAACCTTCAAAATGGAAggcttaaaaatatatttgaagatTCGACagatctaaaacaaaaaataatagacaCATTACCAATTaatatatctcCATTGGATGGTGGTTCTAAATTTGTATGCATATCCTGTCATGACAAAGTTATTCTTTATCATAAGTTTATTCAAGAAGTTTTAAAGTATGAAAGAGAATTAGATAGCGAAGAAAGTAATTGTTTTCATGAGTTtacaagaaatgaaaaagaacaaacagaTATATTTGCCAAGATTTGTAGTGATACAGTATGCCCATGCCCAAATTGTAATGTCgatttaatgatattattagtTAGTAATCCACAAAACTGTGATTATAGTTTTCAAATTTCACTAGCAATTGTTGGTCATACAGAGAAAATTTATCCTACAAAAGAGCAAAATCTTCAAAACTTTGAAAAACCTATAGCACTTAATATAAAACAAGACAATGTAAATCCACAAAACTGTATCAAATTAAAAGCAAATATAAATGGAGAAagtatggaaataaaaaacattaacCGTAAAAATACATTGGCATATAATATGACCGGTAAGGAAAATTCTTTAAACAGGACACAGAAagatgttaaaagaaaatttaaaagaaatataacatataaagaAACTTCAAATTCTGTCAAGATTCCTAAATTAGAAGTAATTTATGAACCATATCCTGAACTTGTAAATTGTAAGGATACAAACACATCAGTAAAATTAGAATctacttataataatattgtatggTTCAATTATAAAGATGATTGTAACTCTATGACAGATAAACAACatgaaaaaatcattaataacGAGGATATTAAAACAGAAGacaaagataatataaaatcttgTCCGAGAATCATATGCAATTTATGTGGTGCTCGCTATCTTTcacaattaaaatatgaatttcatATGGAAAGACACAAGTTTGATTGTAtggataaatatgtatgtattgtttGTAGAAAAGAAGCaagtaatgaaaatttattgtgggatcattattattacacacATAAAAACTCGCAACGTTTTGTTTGCTTGGAATGTGATAAATTATTCTCAAAATATGCAAGAATAAAGGGACATCaaaaaaaacataaacatTCTGGTattcaagaaataaatgttgatattggtaataatgaaattgataataatacaaagaaagaacttGCAGTAAAAATACAAGGAAAAACATTTACCAATTGTAATCTATGTGGAAAATTAATCTTTGATTTAGATCCAGATGCTATTAATGACTTGGTTACTTGTTCTTCTTGTGAAGATTCTACTCTTTCTTTAGTTGTAGATGGAAATGAAGCGAAAGTAATATCACCCCGTCAATATCATTGTTCCAAATGTCCTAAACATTTTGTACGTAAAGAAAGATTGGAATTTCACGAAATGCGGCacaatgaaaatatgaaagaatttatttgtaGTACTTGTGGCAAAGAGTTTAGCGCAGAAAATTCTTTATACGAGCATTATCTCTTTGTTCATAAAGGTGCAAGACCTTATATTTGTGAATTATGTGGTAAGTCGTTTCAATTGAAAGCACGTTTACGAGAGCATCATCGTACTCATACTGGTGAAAGACCTTTTCAATGTGACGTGTGTGGACAAAAATGTACAACTAAAAATGCTTTAAGACTTCACAGAAAGATACACTTTTCTCATAACcgttatatttgtaatatatgtaataaatcatttagaaagaaacaaaacatgAATGAACATTTAGAAAAACATTGGAaacatgataaaaatatattactaccACAAGTATTTACATGCCCTATATGTATGGAGGATTTTCCAACATACAGAATGTTAAAATATCACATGATAGAAATCCATGAAATTAGTAATCAAGATCCAATTTTAATTGAACAAAAACCATGGTATGAATGTGAAGAATGTCACGAAAAATTTAAACATCAAATGTCCTTAAAAGCACACAAAGAACGAATACATGAGGGTAAAGTAGATCCTATATATCAATGTGATATTTGTAATGCCTCTTACAGAGTAAAAcaacttttaataaatcatataagAAGTAAGCACAATGGtgaaaaacgatataaatgtGCACAGTGTGAGAAGGGTTTCAATGACACTAAATCTTTGTATAATCACGTTCTCCTACATACCGGTAAAAAACCATTTGTTTGCGAATATTGCAATATGAGTTTTAGACGTAAAGACTCGAGGGATCATCATCAAAGAAAACATACAGGTGAATTACCTTATCAGTGTCAGGATTGTGGAGAACATTTTGCTACATACAATTATCGATCAAAGCATCGTAAACAGCATCATGATAAAGGTGATTTAGAATGTCCCGAATGTGGAGAAAAATGTAACGATCAACAAGAAATTagaattcatttaaataatcatttagGCGAAAAATTAAAGCAGTTGCAAAATGTCTAA
- Protein Sequence
- MLLCRLCGINLQNGRLKNIFEDSTDLKQKIIDTLPINISPLDGGSKFVCISCHDKVILYHKFIQEVLKYERELDSEESNCFHEFTRNEKEQTDIFAKICSDTVCPCPNCNVDLMILLVSNPQNCDYSFQISLAIVGHTEKIYPTKEQNLQNFEKPIALNIKQDNVNPQNCIKLKANINGESMEIKNINRKNTLAYNMTGKENSLNRTQKDVKRKFKRNITYKETSNSVKIPKLEVIYEPYPELVNCKDTNTSVKLESTYNNIVWFNYKDDCNSMTDKQHEKIINNEDIKTEDKDNIKSCPRIICNLCGARYLSQLKYEFHMERHKFDCMDKYVCIVCRKEASNENLLWDHYYYTHKNSQRFVCLECDKLFSKYARIKGHQKKHKHSGIQEINVDIGNNEIDNNTKKELAVKIQGKTFTNCNLCGKLIFDLDPDAINDLVTCSSCEDSTLSLVVDGNEAKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMKEFICSTCGKEFSAENSLYEHYLFVHKGARPYICELCGKSFQLKARLREHHRTHTGERPFQCDVCGQKCTTKNALRLHRKIHFSHNRYICNICNKSFRKKQNMNEHLEKHWKHDKNILLPQVFTCPICMEDFPTYRMLKYHMIEIHEISNQDPILIEQKPWYECEECHEKFKHQMSLKAHKERIHEGKVDPIYQCDICNASYRVKQLLINHIRSKHNGEKRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNMSFRRKDSRDHHQRKHTGELPYQCQDCGEHFATYNYRSKHRKQHHDKGDLECPECGEKCNDQQEIRIHLNNHLGEKLKQLQNV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01232582;
- 90% Identity
- iTF_01512996;
- 80% Identity
- -