Vcra003023.1
Basic Information
- Insect
- Vespa crabro
- Gene Symbol
- -
- Assembly
- GCA_025728115.1
- Location
- JAITYU010018199.1:113340-115937[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.015 1.1 9.6 0.7 1 23 327 350 327 350 0.93 2 14 0.0039 0.28 11.4 2.1 1 23 356 378 356 378 0.97 3 14 0.074 5.3 7.4 5.3 1 23 462 484 462 484 0.93 4 14 0.0034 0.25 11.6 0.4 1 23 491 514 491 514 0.91 5 14 4.3e-05 0.0031 17.6 2.0 1 23 520 542 520 542 0.99 6 14 0.00033 0.023 14.8 2.9 1 23 548 570 548 570 0.98 7 14 4.9e-06 0.00035 20.6 1.8 1 23 576 598 576 598 0.98 8 14 0.0054 0.39 11.0 0.3 1 23 611 634 611 634 0.95 9 14 8.5e-05 0.0061 16.7 3.7 1 23 650 673 650 673 0.96 10 14 1.9e-05 0.0013 18.7 0.4 1 23 681 704 681 704 0.98 11 14 0.00053 0.038 14.2 0.7 1 23 710 732 710 732 0.97 12 14 0.00016 0.011 15.8 4.9 1 23 738 760 738 760 0.98 13 14 0.012 0.86 9.9 6.1 1 23 766 788 766 789 0.96 14 14 0.00082 0.058 13.6 0.4 2 23 795 816 794 816 0.96
Sequence Information
- Coding Sequence
- ATGTTATTGTGTCGTTTATGTGGTATAAACCTTCAAAACGGAAGGCTTAAAAATATATTTGAAGATTCGACAGATCTAAAACAAAAAATAATAGACACATTACCAATTAATATATCTCCATTGGATGATGGCTCTAAATTTGTATGTATATCCTGTCATGACAAAGTTATTCTTTATCATAAGTTCATTCAAGAAGTTTTAAAATATGAAAGAGAATTAAATAACGGAAAAAGTAATTGTTTTCATGAGTTTACAAGAAATGAAAAAGAACAAACAGATATATTTGCTAAGATTTGTAATGATACAGTATGCACATGTCCAAATTGTAATGTCGATTTAATGATATTATTAGTTAGTAATCCACAAAACTGTGATTATAGTTTTCAAATTTCACTAGCAATTGTTGGTCATACTGAAAAAACTTACCCAACAAAAGAGCAAAATCTTCAAAACTTCGAAAAACCAATAGCGCTTAATATAAAACAAGACAATGTAAATCCACAAAATTGTATCAAATTAAAAGCAAATATGAATGGAGAAAGTATTGAAATAAAAGACATTAATCGTAAAAATACATTGACATATAATATGATTGGTAAGGAAAATTCCTTAAATAGGACACAGAAAGATGTCAAAAGAAAATTTAAGAGAAATATAAAATATAAAGAAACTTCAGATTCTGTTAAGATTCCTAAATTAGAAGTAATTTATGAGCCATATTCTGAACTTGTAAATTGTAAGGATACAAATACATCAGTAAAATTAGAATCTACTTATGATAATATTGTATGGTTCAATTGTGAAAAAAACTATAAGAAGCACGACAGAATCATTAATAATGAGGATATTAAAACAGACGACAAAGATAATATAAAATCTTGTCCAAGAATTGTATGTAATTTATGTGGTGCTCGATATCTTTCACAATTAAAATATGAATTTCATATGGAAAGACACAAATTTGATTGTATGGATAAATATGTATGTACTGTTTGTAAAAAAAAAGCAAGTAATGAAAATTTATTGTGGGATCATTATTATTATACACATAAAAATTCACAACGTTTTATTTGCTTGGAATGTGATAAATTATTTTCAAAATATACAAGATTAAAGGGACATCAAAAGAAGCATAAACATTCTGGTATTCAGGAGATAAATGTCGATATTGGTAATAATGACTTAGACATTGATAATACACAGAAAGAACTTGCAGTAAAAATACAAGGAAAAACATTCACCAATTGTAATTTATGTGGAAAATTAATTTTTGATTTAGATCCAGATGCTATTAATGATTTGGTTACTTGTTCTTCTTGTGAAGATTCTACTCTTTCTTTAGTTGTAGATGGAAATGAAGCAAAAGTAATATCACCCCGTCAATATCATTGTTCCAAATGTCCTAAACATTTTGTACGTAAAGAAAGATTAGAATTTCATGAAATGCGACACAATGAAAATATGAAAGAATTTATTTGTAGTACTTGTGGTAAAGAGTTTAGTGCAGAAAATTCTTTATATGAGCATTATCTCTTTGTTCATAAGGGTGCAAGACCTTATGTTTGTGAATTATGTGGTAAGTCGTTTCAATTGAAAGCACGTCTACGAGAGCATCATCGTACTCATACTGGTGAAAGACCTTTTCAATGTGATGTGTGTGAACAAAAATGTACAACTAAAAATGCTTTAAGACTTCATAGAAAAATACATTTTTCTCATAACCGTTATATTTGTAATATTTGTAATAAGTCATTTAGAAAGAAACAAAATATGAATGAACATTTAGAAAAACATTGGAAACATGATAAAAATATATTATTACCACAAGTATTTACATGCCCTATATGTATGGAGGATTTTCCAACATATAGAATGTTAAAATATCATATGATAGAAACCCACGAAATTAGTAATCAAGATCCAATTTTAATTGAACAAAAACCATGGTATGAATGTGAAGAGTGTCACGAAAAATTTAAACATCAAATGTCCTTAAAGGCACACAAAGAACGAATACATGAGGGTAAAGTAGATCCTATATATCAATGTGATATTTGTAATGCCTCTTATAGAGTAAAACAACTTTTAATAAATCATATAAGAAGTAAACACAATGGCGAAAAACGATATAAATGTGCACAGTGTGAGAAAGGTTTTAATGATACTAAATCTCTGTATAATCATGTTCTTCTACATACTGGTAAAAAACCATTTGTTTGCGAATATTGCAATATGAGTTTTAGACGTAAAGATTCGAGGGATCATCATCAAAGAAAGCATACAGGTGAATTACCTTATCAATGTCAGGATTGTGGAGAACATTTTGCTTCATACAATTATCGATCAAAGCATCGTAAACAGCATCATGATAAAGGTGATTTAGAATGTCCTGAATGTGGAGAAAAATGTAATGATCAACAAGAAATTAGAATTCATTTGAATAATCATCTAGGAGAAAAATTAAAGCAGTTGCAAAATGTCTAA
- Protein Sequence
- MLLCRLCGINLQNGRLKNIFEDSTDLKQKIIDTLPINISPLDDGSKFVCISCHDKVILYHKFIQEVLKYERELNNGKSNCFHEFTRNEKEQTDIFAKICNDTVCTCPNCNVDLMILLVSNPQNCDYSFQISLAIVGHTEKTYPTKEQNLQNFEKPIALNIKQDNVNPQNCIKLKANMNGESIEIKDINRKNTLTYNMIGKENSLNRTQKDVKRKFKRNIKYKETSDSVKIPKLEVIYEPYSELVNCKDTNTSVKLESTYDNIVWFNCEKNYKKHDRIINNEDIKTDDKDNIKSCPRIVCNLCGARYLSQLKYEFHMERHKFDCMDKYVCTVCKKKASNENLLWDHYYYTHKNSQRFICLECDKLFSKYTRLKGHQKKHKHSGIQEINVDIGNNDLDIDNTQKELAVKIQGKTFTNCNLCGKLIFDLDPDAINDLVTCSSCEDSTLSLVVDGNEAKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMKEFICSTCGKEFSAENSLYEHYLFVHKGARPYVCELCGKSFQLKARLREHHRTHTGERPFQCDVCEQKCTTKNALRLHRKIHFSHNRYICNICNKSFRKKQNMNEHLEKHWKHDKNILLPQVFTCPICMEDFPTYRMLKYHMIETHEISNQDPILIEQKPWYECEECHEKFKHQMSLKAHKERIHEGKVDPIYQCDICNASYRVKQLLINHIRSKHNGEKRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNMSFRRKDSRDHHQRKHTGELPYQCQDCGEHFASYNYRSKHRKQHHDKGDLECPECGEKCNDQQEIRIHLNNHLGEKLKQLQNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01232582;
- 90% Identity
- iTF_01512996;
- 80% Identity
- -