Vcar023534.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- -
- Assembly
- GCA_905220365.1
- Location
- LR999941.1:484252-499377[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-10 4.6e-08 33.2 0.0 4 39 186 222 183 226 0.90 2 4 1.1e-11 3.6e-09 36.7 0.6 4 39 240 275 238 278 0.94 3 4 2.2e-14 7.4e-12 45.3 0.1 2 45 293 337 292 337 0.96 4 4 5.4e-18 1.8e-15 56.9 0.0 1 42 344 386 344 387 0.96
Sequence Information
- Coding Sequence
- ATGCCTGGAACAAATACATTCCAAGTGAAATGCGAACCTCTATCGGATGAAGAAGAAAACACCGCGCTTTACCCTAAAGCTTACTTTAGTGACCACTCGACGCTGGACTACATTCCAATAAAGTTAGAAACAAACCCGAGAGTTGATGAGAATGCCTCGTCCAATCTGCTGCATCATTTACAGGGACACTTTCATACTAATAACTGCCTTCAGCAGTGCGTGCAAGGCTCGCTGGAGGAGCTGGCGCCCGCCCCCGCGGGCCCGGCCGCGACGCCCGTGTGCGAGCACGTGCCCGCGCCGCGCGACGCCTCGCTCGCCACGCTCGAGCCCGCGCACGCGCACGACGTGGGCTCTTCGCTCATAAGTCGCCACATGGAAATGATGAATACGACGGAAGTTGCGGATTCGGCCGAGTTCGTTCCGCTCATGTCCATCAAAGACGAGCCCACATCTGAAGGAGAGCAGCCTCAGTTAAGCAGCGACGACACGAGTGATTCCAACGGGCCTCCGCAGGAGACGGGCAGTCGCGGGAGCCCGAAGAGCTGGACTCAGCGGGACATGGACCAGGCTTTGGAGGCGCTTCGCAAACATCATATGAGTCTCACTAAGGCGTCGGCGCGGTTCGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGACGGCGCCGCCAAGTCGTGGGGCGCCGGCGAGCTGCAGCGCGCGCTGGCCGCGCTGCGCGCCGGCGCGCTGTCCGCCAACAAGGCCAGCAAGGCGTACGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGCCTGGCGGCGCCCTTCAACGCCGCGCCCACGGCCTGGCGCCGCGCCGACCTGGCGCGCGCGCTCGCCGCCATCCGCTGCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCGCAGTTCGGCATCCCCACCGGGACGTTATACGGGCGATGTAAGCGAGAGGGGATTGAGCTGTCGCGCTCCAACCCCACGCCATGGTCCGAAGACGCCATGGAAGAGGCTTTAGAAGCGGTCAGAGTCGGTCAGATGTCCATTAATCAAGCTGCAATCCATTTTAATCTGCCATATTCATCACTGTACGGTCGTTTCAAGAGGTGCAAATATCAACCAGTTCAGGGTCAACCTCCTCAACAGGAGCTTCCGAAACCCCCTGAGTCCGAGGGCCAACTACAGGACATGTACTACCAACAACTGACACACACACATACGGAACCTGAAGCACAAAATGTTTACATGAACGATATGGAATCCCATGGCCTTCAGCCCTTACACTACGGGCAGATGTACTATTCGCCGTGTCACGTCACCAGCTGA
- Protein Sequence
- MPGTNTFQVKCEPLSDEEENTALYPKAYFSDHSTLDYIPIKLETNPRVDENASSNLLHHLQGHFHTNNCLQQCVQGSLEELAPAPAGPAATPVCEHVPAPRDASLATLEPAHAHDVGSSLISRHMEMMNTTEVADSAEFVPLMSIKDEPTSEGEQPQLSSDDTSDSNGPPQETGSRGSPKSWTQRDMDQALEALRKHHMSLTKASARFGIPSTTLWQRAHRLGIDTPKKDGAAKSWGAGELQRALAALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQPVQGQPPQQELPKPPESEGQLQDMYYQQLTHTHTEPEAQNVYMNDMESHGLQPLHYGQMYYSPCHVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01078994;
- 90% Identity
- iTF_01079816; iTF_01080652; iTF_01507987; iTF_01506262;
- 80% Identity
- -