Nio012477.1
Basic Information
- Insect
- Nymphalis io
- Gene Symbol
- -
- Assembly
- GCA_905147045.1
- Location
- LR989911.1:507116-515875[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.3e-12 1.3e-08 34.9 0.0 4 39 209 245 206 249 0.90 2 4 2.1e-12 3.2e-09 36.8 0.8 4 39 263 298 261 301 0.94 3 4 1.3e-14 2e-11 43.9 0.1 2 45 316 360 315 360 0.96 4 4 1.2e-18 1.9e-15 56.8 0.0 1 42 367 409 367 410 0.96
Sequence Information
- Coding Sequence
- ATGCCTGGAACACACACATTTCAAGTGAAATGCGAACCTCTATCAGATGAAGAAGAAAACAACGCACTATACGCTAAAACTTATTTTAATGACCACCCGTCGACACTGGACTACATTCCAATAAAGCTAGAAACGAACCCGAGAGTGGATGAAAATGCCTCGTCCGGTCTGCTACATCACTTACAGCAGTGCGTGCAAGGTTCGCTGGAGGAGCTCGCCCCCGCCCCCGCGGGCCCCGCCGCTACGCCCGTGTGCGAGCACGTGCCCGCGCCGCGAGACGCCTCGCTCGCTACGCTCGAGACCGCGCACGCACACGACGTGGTGAGTCTGAACACTGCAATGTACACAACACGCATACTTACCATACTTCTTAGAAGTAGATACTTACTTCTAGTCTTCATAAAGAACAATATTCAGGGCTCTTCGCTCATAAGTCGTCACATGGACATGATGAACACGACCGAAGTGGCAGATTCAGCCGAGTTCGTTCCGCTCATGTCCATTAAAGACGAGCCCACGTCTGAAGGAGAGCAGCATCAGTTAAGCAGCGACGACACGAGCGATTCGAACGGCCCCCCACAGGAGACGGGCAGTCGCGGGAGCCCTAAGAGCTGGACTCAGCGGGACATGGACCAAGCTTTGGAGGCGCTTCGGAAGCATCATATGAGTCTCACTAAGGCGTCGTCCCGGTTCGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGACGGCGCCGCCAAGTCGTGGGGCGCCGCCGACCTGGCGCGCGCGCTCGCCGCCCTGCGCGCCGGCGCGCTCTCCGCCAACAAGGCCAGCAAGGCCTACGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGCCTGGCGGCGCCGTTCAACGCGGCGCCCACGGCGTGGCGGCGCGCCGACCTGTCGCGCGCGCTGGCCGCCATCCGCTGCGGCGCCGCGTCCGTGCAGCGCGCCGCCGCGCAGTTCGGCATCCCCACCGGGACGTTATACGGGCGATGTAAACGAGAAGGGATTGAGCTGTCTCGCTCCAACCCCACGCCCTGGTCTGAGGACGCTATGGAAGAGGCTTTGGAAGCGGTCAGAGTCGGTCAGATGTCCATTAATCAAGCGGCGATCCACTTCAATCTCCCGTATTCCTCACTGTACGGTCGATTCAAGAGATGCAAATATCAACCTGTTCAGGGTCAGCCTCCTCAACAGGAGATACCAAAACCCCCTGAATCCGAGAGTCAAGCACAAGACATGTACTACCAACAACTGACGCACACACATACGGAACTTGAAGCACAAAATCCTTACATGAACGATATGGAATCACATGGCCTTCAGACCTTACACTACGGGCAGATGTACTACACGCCGTGTCACGTGACCAGCTGA
- Protein Sequence
- MPGTHTFQVKCEPLSDEEENNALYAKTYFNDHPSTLDYIPIKLETNPRVDENASSGLLHHLQQCVQGSLEELAPAPAGPAATPVCEHVPAPRDASLATLETAHAHDVVSLNTAMYTTRILTILLRSRYLLLVFIKNNIQGSSLISRHMDMMNTTEVADSAEFVPLMSIKDEPTSEGEQHQLSSDDTSDSNGPPQETGSRGSPKSWTQRDMDQALEALRKHHMSLTKASSRFGIPSTTLWQRAHRLGIDTPKKDGAAKSWGAADLARALAALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLSRALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQPVQGQPPQQEIPKPPESESQAQDMYYQQLTHTHTELEAQNPYMNDMESHGLQTLHYGQMYYTPCHVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01080652; iTF_01507091; iTF_01079816; iTF_01507987; iTF_01506262;
- 90% Identity
- -
- 80% Identity
- -