Vtam010992.1
Basic Information
- Insect
- Vanessa tameamea
- Gene Symbol
- -
- Assembly
- GCA_037043105.1
- Location
- CM073291.1:496717-504677[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-11 1.1e-08 35.1 0.0 4 39 177 213 174 217 0.90 2 4 3e-12 2.8e-09 37.0 0.8 4 39 231 266 229 269 0.94 3 4 1.8e-14 1.7e-11 44.1 0.1 2 45 284 328 283 328 0.96 4 4 1.7e-18 1.6e-15 56.9 0.0 1 42 335 377 335 378 0.96
Sequence Information
- Coding Sequence
- atGCCTGGAACGAATACATTTCAAGTGAAATGCGAACCTCTATCGGATGAGGAAGAAAGCACCGCACTGTTcactaaaacttattttaacgaCCACCGGTCGACGCTGGACTACATTCCAATAAAGTTAGAAACAAACCCGAGAGTTGATGAAAATGCCTCGTCCAATCTGCTACATCATTTACAGCAATGCGTGCAAGGCTCGCTGGAGGAGCTGGCCCCCGCCCCCGCGGGCCCCGCCGCGACGCCCGTTTGCGAGCACGTGCCCGCGCCGCGCGACGCCTCGCTCGCTACGCTCGAGCCCGCGCACGCACACGACGTGGGATCCTCGCTCATAAGTCGCCACATGGAAATGATGAACACGACGGAAGTGGCGGATTCGGCCGAGTTTGTTCCGCTCATGTCCATCAAAGACGAGCCCACGTCTGAAGGAGAGCAACATCAGTTAAGCAGCGACGACACGAGCGATTCCAACGGCCCCCCGCAGGAGACGGGCAGTCGCGGGAGCCCGAAGAGCTGGACTCAGCGGGACATGGACCAGGCTTTGGAAGCGCTTCGGAAACATCATATGAGTCTTACTAAGGCGTCGTCGCGGTTCGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGCCTCGGCATCGACACGCCCAAGAAGGACGGCGCCGCCAAGTCGTGGGGCGCCGCCGACCTGGCGCGCGCGCTGGCCGCGCTCCGCGCCGGCGCGCTCTCCGCCAACAAGGCCAGCAAGGCCTACGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCGACGGCGTGGCGGCGCGCCGACCTGTCCCGCGCGCTGGCCGCCATCCGCTGCGGCGCCGCGTCCGTGCAGCGCGCCGCCGCGCAGTTCGGCATCCCCACCGGGACGTTATACGGCCGATGTAAAAGAGAGGGGATTGAACTGTCTCGCTCGAATCCTACGCCATGGTCCGAAGACGCCATGGAAGAGGCTTTAGAAGCCGTCAGAGTGGGTCAGATGTCCATTAATCAAGCTGCAATCCATTTCAATCTCCCATATTCTTCACTGTACGGTCGCTTCAAGAGGTGCAAATATCAACCAGTTCAGGGTCAACCAGCTCAACAGGACCTTCCAAAACCAACTGAATCCGAGAGCCAACCACAGGATATGTACTACCAACAACTAACACATACTCATACGGAACCTGATGCACAGAATCCTTACATGAACGATATCGAATCCCATAGCCTTCAGCCCTTACACTACGGGCAGATGTACTATTCGCCGTGTCACGTCACCAGCTGA
- Protein Sequence
- MPGTNTFQVKCEPLSDEEESTALFTKTYFNDHRSTLDYIPIKLETNPRVDENASSNLLHHLQQCVQGSLEELAPAPAGPAATPVCEHVPAPRDASLATLEPAHAHDVGSSLISRHMEMMNTTEVADSAEFVPLMSIKDEPTSEGEQHQLSSDDTSDSNGPPQETGSRGSPKSWTQRDMDQALEALRKHHMSLTKASSRFGIPSTTLWQRAHRLGIDTPKKDGAAKSWGAADLARALAALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLSRALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQPVQGQPAQQDLPKPTESESQPQDMYYQQLTHTHTEPDAQNPYMNDIESHSLQPLHYGQMYYSPCHVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01078994;
- 90% Identity
- iTF_01507091;
- 80% Identity
- -