Nurt003918.1
Basic Information
- Insect
- Nymphalis urticae
- Gene Symbol
- -
- Assembly
- GCA_905147175.1
- Location
- LR989997.1:12352619-12359832[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.2e-12 1.2e-08 35.1 0.0 4 39 176 212 173 216 0.90 2 4 1.6e-12 3.2e-09 37.0 0.8 4 39 230 265 228 268 0.94 3 4 3.8e-15 7.6e-12 45.4 0.1 2 45 283 327 282 327 0.96 4 4 9.3e-19 1.9e-15 56.9 0.0 1 42 334 376 334 377 0.96
Sequence Information
- Coding Sequence
- ATGCCGGGAACACACACATTTCAAGTGAAATGCGAACCTCTATCAGATGAAGAAGAAAACAACGCACTATACGCTAAAACTTATTTTAATGACCACTCGTCGACACTGGACTACATTCCAATAAAGCTAGAAACGAACCCGAGAGTTGATGAAAATGCCTCGTCCGGTCTGCTACATCATTTACAGTGCGTGCAAGGTTCGCTGGAGGAGCTCGCCCCCGCCCCCGCGGGCCCCGCCGCTACGCCCGTGTGCGAGCACGTGCCCGCGCCGCGAGACGCCTCGCTCGCTACGCTCGAGACCGCGCACGCACACGACGTGGGGTCTTCGCTCATAAGTCGACACATGGAAATGATGAACACGACCGAAGTGGCGGATTCAGCCGAGTTCGTTCCGCTCATGTCCATCAAAGACGAGCCCACGTCTGAAGGAGAGCAGCATCAGTTAAGCAGCGACGACACGAGCGATTCGAACGGCCCTCCGCAGGAGACGGGCAGTCGCGGGAGCCCTAAGAGCTGGACTCAGCGGGACATGGACCAAGCCTTGGAGGCGCTTCGGAAGCATCATATGAGTCTTACTAAGGCGTCGTCGCGGTTCGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGACGGCGCCGCCAAGTCGTGGGGCGCCGCCGACCTGGCGCGCGCGCTCGCCGCCCTGCGCGCCGGCGCGCTGTCCGCCAACAAGGCCAGCAAGGCCTACGGTATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGCCTGGCGGCGCCGTTCAACGCGGCGCCCACGGCGTGGCGGCGCGCCGACCTGGCGCGCGCGCTCGCCGCCATCCGCTGCGGCGCCGCGTCCGTGCAGCGCGCCGCCGCGCAGTTCGGCATCCCCACCGGGACATTATACGGGCGGTGTAAGCGAGAAGGGATTGAGCTGTCTCGCTCCAACCCCACGCCCTGGTCCGAGGACGCCATGGAAGAGGCTTTGGAAGCGGTCAGAGTCGGTCAGATGTCCATTAACCAAGCGGCGATCCACTTCAACCTCCCGTACTCCTCACTCTACGGTCGCTTTAAGAGATGCAAATATCAACCTGTTCAGGGTCAGCCCCCTCAACAGGAGACACCAAAGCCCCCTGAATCCGAGAGTCAAGCACACGACATGTACTACCAACAACTGACGCACACAAATACGGAACTTGAAGCACAAAATCCTTACATGAACGATATGGAATCGCATGGCCTTCCCTTACACTACGGGCAGATGTACTACACGCCGTGTCACGTGACCAGCTGA
- Protein Sequence
- MPGTHTFQVKCEPLSDEEENNALYAKTYFNDHSSTLDYIPIKLETNPRVDENASSGLLHHLQCVQGSLEELAPAPAGPAATPVCEHVPAPRDASLATLETAHAHDVGSSLISRHMEMMNTTEVADSAEFVPLMSIKDEPTSEGEQHQLSSDDTSDSNGPPQETGSRGSPKSWTQRDMDQALEALRKHHMSLTKASSRFGIPSTTLWQRAHRLGIDTPKKDGAAKSWGAADLARALAALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQPVQGQPPQQETPKPPESESQAHDMYYQQLTHTNTELEAQNPYMNDMESHGLPLHYGQMYYTPCHVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01078994;
- 90% Identity
- iTF_01507091;
- 80% Identity
- -