Ucar010991.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- Lrrfip2_1
- Assembly
- GCA_960531455.1
- Location
- OY482671.1:36298036-36323523[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-115 2.7e-110 369.7 28.5 1 299 19 311 19 312 0.90 2 2 0.037 1.7e+03 -0.7 4.5 209 246 330 366 314 386 0.57
Sequence Information
- Coding Sequence
- ATGCCCTCTGCGGTAGCATCCCAGGAGAAACTGTTTGCTAAGCATGATGTTATGGCTGAGGCACGTTTGGCTGCACGACGCCAAGCGCGGGCTGAGGCTCGTGAAATACGAATGCGTGAGTTGGAGCGccaacaaaaagaacaagaacaGAATGCCGACAGAGTTTTTGATATGCACAATGTGTCCGGCATCGATCCATTGTCACGATCTCGATTCGCGACTGGTGTTGGTAGCTCGCCTTTGGGGGCAGTGATTAATAGTGCGAGGGCCAACTCGATGTCGTCACGTCGCAGCAGTGAAGATTCATTGGAGGAGGAAGGACGTAGTCTACGAGATATACGACACGAACTAAAGGATGTAGAGGAAAGGTTTCGCAAAGCAATGATCGCAAATGCGCAGTTGGATAATGAACGTGCCTCACAAACGTATCAAATAAACCTTTTAAAGGATAAACTGGAGGAAATCGAAGAATCGTATGCGCAATTACAGCGTGAATTTAAAGAGAAATCGCGTGATTGTAATGCGCTGAAGAGGAACGTGGATAAATTAAATGAAGAATTGAAATTGGTGCAGGGCCAACTAAATGAACGTGATCAACTTATTTCGGATCAGGGCTTAGTGATTGTGGCCATAGAAAATGAAGATGGTACTGATGCAAAACGTGCTCTAGTCAGCGTGGAAAATGCTCAGCTGTTAGGTTCAGTGCAAGGTTCATTGGATGTGCGACTGAAAAAATTCAGTGGAGAAAAGCAACAGCTTATGGCCGAGGTGCAGAAATTACAAGATACATTAGAGAGTTACAAAAGTCAAGGACGATCAAATTCACTGAACGGCCCATCGGGGTCTGATGAAGATTACGAAGCACAGAGAGAAGCGAATAAAATAATAACGGAATACAAGTATAAACTGCAAAAAGCTGAACAAGAAATCGCGAGCCTACAAGCCAGTTTAGCACGTTCTGAAACACAAGTTATACGTTATAAAAGTACCGCTGAAGCCGCTGAAAAAGCAGAATCTGAACTAAAAGTAGAGCGAAGAAAACTTCAAAGAGAGAATCGTGAGGCAATGGAACGTTTGGAAGAATTGGAGACATCAAATAATCACCTGTTGAAACGATTGGACAAACTAAAGAATGCTAAAAGTGCTTTACTCAAAGAACTTTGA
- Protein Sequence
- MPSAVASQEKLFAKHDVMAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHNVSGIDPLSRSRFATGVGSSPLGAVINSARANSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQTYQINLLKDKLEEIEESYAQLQREFKEKSRDCNALKRNVDKLNEELKLVQGQLNERDQLISDQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSGEKQQLMAEVQKLQDTLESYKSQGRSNSLNGPSGSDEDYEAQREANKIITEYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAESELKVERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00081223; iTF_00091241;
- 90% Identity
- iTF_00081223;
- 80% Identity
- -