Afra007380.1
Basic Information
- Insect
- Anastrepha fraterculus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_037575425.1
- Location
- JAYXIM010008850.1:1-4449[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-117 2.7e-112 376.3 30.5 1 299 1 295 1 296 0.91 2 2 0.047 2.1e+03 -1.0 4.0 220 244 324 348 299 370 0.47
Sequence Information
- Coding Sequence
- GCTGAGGCCCGTTTGGCTGCCCGCCGGCAAGCACGCGCTGAGGCACGTGAAATACGAATGCGAGAATTAGAACGCCAACAAAAGGAACAGGAACAAAATGCAGATCGCGTTTTTGACATGCACAATGTATCCGGCATTGATCCACTATCGCGATCGCGACTTGCAACAGGTGTGGGAAGTTCGCCATTGGGTGCGGTGCTTAACAGCACACGCGTTAGCTCAATGTCATCGCGACGCAGCAGTGAAGATTCACTGGAAGAGGAAGGACGCAGCCTGCGAGATATACGACATGAGCTTAAGGATGTTGAGGAGAGATTTCGGAAGGCAATGATAGCCAATGCGCAATTGGATAATGAACGTGCCTCACAAACGTATCAAATACAACTGTTGAAGGACAAACTGGAAGAAGTGGAAGAATCATATGCGCAACTTCAGCGAGAATTCAAAGAGAAATCACGTGATTGCAATGCGCTGAAAAGAAATTTAGATAAATTAAGTGAAGAACTTAAACTGGTGCAAGGTCAACTCACTGAACGCGATAAACTTATCGCCGATCAGGGTTTAGTTATTGTGGCCATAGAGAATGAAGAGGGTACTGATGCAAAACGTGCTCTAGTCAGTGTAGAGAATGCTCAGCTGTTAGGTTCAGTGCAAGGTTCTTTGGATGTGCGACTGAAAAAATTCAGTGAGGAAAAGCAACAGCTTTTGGCAGAAGTGCAGAAACTACAGGAAGCATTAGAGAACTACAAGAGTCAAGGCAAAGGGCGATCGAATTCGCTTAACGGACCATCGGGGTCTGATGAGGACTACGAAGCACAAAGAGAGGCGAACAAAATAATATCAGACTACAAGTATAAACTGCAGAAGGCTGAACAAGAGATCGCCAGCTTGCAAGCCAGTTTGGCACGTTCAGAAACGCAAGTCATACGTTATAAAAGCACAGCAGAGGCGGCTGAAAAGGCAGAAGCGGAACTTAAAATTGAGCGGAGAAAATTGCAAAGAGAGAATCGTGAGGCCATGGAACGTCTGGAAGAGTTGGAAACTTCAAATAATCACCTGCTAAAGCGACTGGACAAACTAAAGAATGCTAAAAGCGCATTACTGAAGGACCTTTGA
- Protein Sequence
- AEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHNVSGIDPLSRSRLATGVGSSPLGAVLNSTRVSSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQTYQIQLLKDKLEEVEESYAQLQREFKEKSRDCNALKRNLDKLSEELKLVQGQLTERDKLIADQGLVIVAIENEEGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLLAEVQKLQEALENYKSQGKGRSNSLNGPSGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01505400;
- 90% Identity
- iTF_00091241; iTF_01505400;
- 80% Identity
- -