Apur032104.1
Basic Information
- Insect
- Anomoia purmunda
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951828415.1
- Location
- OX639995.1:106866805-106875202[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-117 4e-112 376.3 30.2 1 299 8 302 8 303 0.92 2 2 0.049 3.3e+03 -1.0 4.0 220 244 331 355 306 377 0.47
Sequence Information
- Coding Sequence
- ATGCCACCACCAGATTTACCAGCCGAAGCCCGTTTAGCTGCCCGCCGACAAGCACGTGCTGAGGCACGTGAAATACGAATGCGTGAGTTGGAACGCCAACAAAAAGAACAGGAACAGAATGCTGATCGTGTTTTCGACATGCACAATGTGTCCGGCATTGATCCACTATCACGATCACGACTCGCAACCGGTGTCGGTAGCTCACCTTTGGGTGCGGTGCTCAATAGCACCCGGGCTAGTTCAATGTCCTCGCGTCGCAGTAGTGAGGATTCACTGGAAGAGGAAGGACGCAGCCTGCGAGATATTCGACACGAACTAAAGGATGTTGAGGAGAGATTTCGGAAGGCTATGATAGCCAATGCGCAGTTGGATAATGAACGTGCCTCACAAACGTATCAAATACAACTGTTGAAGGACAAACTGGAGGAAGTAGAAGAATCGTATGCGCAACTTCAGCGAGAATTCAAAGAGAAGTCACGCGATTGCAATGCGTTGAAGAGAAATTTAGATAAATTAAGTGAAGAGCTTAAACTGGTGCAAGGTCAACTCACTGAACGGGATAAACTTATCGCGGATCAGGGTTTAGTTATTGTGGCCATAGAGAATGAAGAGGGTACCGATGCAAAACGTGCTCTAGTCAGTGTAGAGAATGCTCAGCTGTTGGGTTCAGTGCAAGGTTCATTGGatgtgCGACTGAAAAAATTTAGTGAGGAAAAACAACAGCTTTTCGCAGAAGTGCAAAAACTACAGGAAACGTTGGAGAATTACAAGAGTCAGGGCAAGGGACGGTCGAATTCGCTGAACGGACCATCAGGTTCTGATGAGGATTACGAAGCACAAAgagaggcgaataaaataatatcGGACTACAAGTATAAACTGCAGAAGGCTGAGCAAGAAATCGCTAGTTTACAAGCCAGCTTAGCACGTTCAGAAACGCAAGTCATACGCTATAAAAGCACAGCTGAAGCGGCTGAAAAAGCAGAAGCTGAACTGAAGATCGAGCGGAGAAAGCTGCAAAGAGAGAATCGTGAGGCCATGGAACGTCTGGAGGAGTTAGAAACATCAAATAATCACCTGCTGAAACGACTGGATAAACTAAAAAATGCTAAAAGCGCTTTACTCAAAGATCTTTGA
- Protein Sequence
- MPPPDLPAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHNVSGIDPLSRSRLATGVGSSPLGAVLNSTRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQTYQIQLLKDKLEEVEESYAQLQREFKEKSRDCNALKRNLDKLSEELKLVQGQLTERDKLIADQGLVIVAIENEEGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLFAEVQKLQETLENYKSQGKGRSNSLNGPSGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01505400;
- 90% Identity
- iTF_00081223;
- 80% Identity
- -