Tnot021541.1
Basic Information
- Insect
- Tupiocoris notatus
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_037159825.1
- Location
- JASJUZ010000818.1:14870-28566[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-102 6.7e-98 328.0 35.4 1 300 43 349 43 349 0.93 2 2 0.011 2.5e+02 1.1 6.3 120 168 347 395 346 420 0.86
Sequence Information
- Coding Sequence
- ATGGTTGAAGCCATTTTCGTTCCCATATCTGATTGCCCCGGAGCCATAACCGGGCGTCCTTCCATTCTTGCGGTTCACTTAGACGATCAGGTGTTGTGTCTTCGAATAGAATATCTTCAACTGCTGGCTGAAGCGAGGCTAGCTGCTCGGCGGCAGGCGAGGGCCGAGGCCCGCGAGATCCGTATGAAAGAGATCGAAAGGCAGCAGAAGGACGCTGATGAAAATGCAGATCGCATCTACGACATCTACTCTTCTACCCCTGtttcggaCGGTGTCGGCGCCAGGACGAACCGAGTCAATTCTTCGCTCAATAGCAGTCGACTATCGGCCTCAAACAGTTACCAAAGCTCGAGGCGAAGTTCGGAAGATTCGCTGGAAGAGACCGCTTCTCTTAGAGATGTCCGGACCGAACTCCGAGAGGTCGAGGACAAGTTCAGAAAAGCGATGGTCGGCAACGCGCAGCTGGACAATGAAAAAGCGTCGGCTGTTTACCAAGTTGAGCTGTACAAGGACAGATACGAGGAACTGGAAGAGGATTATAATCAGCTTCAGcgAGAGCACAAAGACAAATGCAGACAGCTGGAGCAGATGAAAAGGGATTACGCACGGCTGCAGCAGGACCTGGCCGCGACGTTGGCGGCCCTGGCTGAGCGAGATAGACTAATAGAGGAACAAGGGCTAGTGATAGTCGGCGGAGAAACGTCATCAAGTGCTACTGAAAGTGACGAGGACGACGACAAAGGTGGGGGCgagaagaaaacgaaaaacaacAAACATAGAAAGGCCCTTGTTTCCTCAGATATGGCCAAACTTCTCGACTCGGTCGGCCATGGTTCTCTAGATGTGAGATTGAAAAAGCTCGCAGGTGAAAGAAACGAACTGCAAGACGAACTAAGACATGTCAAACTTGAATTGGAAGAAGAACGTGCTAAATCGAATAAATTCGGTTCGACTCCAGCcgatttggaagaaattcaacGAGAAGCTAACAAACAATTAGGTGATTACAAGTTTAGATTGCAAAAAGCGGAACAAGACGTTTCTACACTTCAAGCTAATGTGGCGCGGCTAGAAGGGCAAGTTGCAAGGTACAAGACGGCGGCCGAATCTTCGGAAAAGAACGAGGACGAGCTAAAACTCGAACGGCGAAAACTTCAAAGAGAGCTGCGAGAAAGCCAAGCGCGCAGCGAGGAACTGGAAACGGCGAATAATCATCTGCAAAAACGATTGGACAAACTGAAGACAGCGAAATCGGCGCTTCTGAAAGATTTGTAG
- Protein Sequence
- MVEAIFVPISDCPGAITGRPSILAVHLDDQVLCLRIEYLQLLAEARLAARRQARAEAREIRMKEIERQQKDADENADRIYDIYSSTPVSDGVGARTNRVNSSLNSSRLSASNSYQSSRRSSEDSLEETASLRDVRTELREVEDKFRKAMVGNAQLDNEKASAVYQVELYKDRYEELEEDYNQLQREHKDKCRQLEQMKRDYARLQQDLAATLAALAERDRLIEEQGLVIVGGETSSSATESDEDDDKGGGEKKTKNNKHRKALVSSDMAKLLDSVGHGSLDVRLKKLAGERNELQDELRHVKLELEEERAKSNKFGSTPADLEEIQREANKQLGDYKFRLQKAEQDVSTLQANVARLEGQVARYKTAAESSEKNEDELKLERRKLQRELRESQARSEELETANNHLQKRLDKLKTAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00386350;
- 90% Identity
- iTF_00145585; iTF_01365450; iTF_00386350; iTF_00930336;
- 80% Identity
- -