Aluc012712.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- lrrfip2
- Assembly
- GCA_009739505.2
- Location
- CM019180.2:40108808-40225144[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-103 1.5e-98 330.0 37.6 1 300 67 369 67 369 0.93 2 2 0.016 3.2e+02 0.5 5.4 123 168 370 415 367 442 0.54
Sequence Information
- Coding Sequence
- ATGTCCGAGGAGGAGGGTCGGTTTGTGTCCATCGTTGACGTCACGTCGGAATCGGGTTGTCTGTCGGACGGTTCGGCTGAGTCGGGCGTTTGTCTGGAGGAAAGGGAAGGTCACACGACGATCATTCGGCTTGGATCGTCGACTTCAGAAGACGATGAGGAACCTGACGGCATCGTCCAGTACTTGGGGAACCAGGAAGCAGAGGCGAGGCTTGCTGCGAGACGGCAGGCGAGGGCAGAAGCCCGCGAGATCCGCATGAAAGAGATTGAGCGGCAGCAGAAGGAAGCTGATGAAAATGCTGATCGAATATACGACATCTACACTTCTACCCCTGACGGCGTCGGTCGGACGAGCAGAGTCAACTCCTCGCTCAACAGCAGTCGCCTGTCAGCTTCAAACAGTTACCAAAGCTCGAGACGAAGTTCTGAAGATTCCCTCGAGGAGACGGCGTCCCTCAGGGATGTCAGGAGCGAACTTCGCGAGGTGGAAGACAAGTTCAGGAAGGCGATGGTCGGGAATGCTCAACTGGACAACGAGAAAGCTGCCGCTGTTTACCAAGTTGAGTTGTACAAGGACAGATACGAGGAACTGGAAGAAGAACACAATCAGCTTCAGAGAGAGCAAAAGGAAAAGTGCCGACAGCTGGAGCAGATGAAGAGGGATTATGTTCGTCTGCAGCAAGACCTCGCAGCTGCCCTCGCAGCCTTGGCTGAGCGCGACAGACTAATAGAGGAGCAGGGCCTGGTGATAGTGGGAGGCGAAACGTCGTCCAGCGCTACGGAAAGCGACGAAGATGATGACAAAGGAGGAGGCGAGAAGAAAGGAAAAGATAAACATAAAAAAGCCCTCGTGTCATCCGACATGGCCAAACTCCTCGATTCGGTCGGCCACGGTTCTCTAGATGTAAGATTAAAGAAGCTCGCTGCGGAAAGGAACGAACTTCAAGACGAGCTGAGACACGTGAAACTCGAACTTGAAGAAGAAAGAGCCAAGTCAAACAGATCCGGGTCTAACCCAGCTGACTTGGAAGATATTCAACGAGAGGCGAACAAGCAACTGGGAGACTACAAATTCAAGCTTCAAAAAGCTGAACAAGACGTTTCTACGCTTCAAGCGACGGTTGCGCGGCTAGACGGACAGGTGGCGCGGTACAAATCGGCAGCTGAGACGTCCGAAAGAAGCGAAGATGAACTCAAAGTAGAACGAAGAAAATTACAAAGAGAGTTGCGAGAATGTCAAGCGCTGTGTGAGGAATTAGAAACATCAAATAATCACCTCCAAAAGAGGCTGGACAAACTGAAGACAGCGAAATCAGCACTTTTGAAGGATTTGTAG
- Protein Sequence
- MSEEEGRFVSIVDVTSESGCLSDGSAESGVCLEEREGHTTIIRLGSSTSEDDEEPDGIVQYLGNQEAEARLAARRQARAEAREIRMKEIERQQKEADENADRIYDIYTSTPDGVGRTSRVNSSLNSSRLSASNSYQSSRRSSEDSLEETASLRDVRSELREVEDKFRKAMVGNAQLDNEKAAAVYQVELYKDRYEELEEEHNQLQREQKEKCRQLEQMKRDYVRLQQDLAAALAALAERDRLIEEQGLVIVGGETSSSATESDEDDDKGGGEKKGKDKHKKALVSSDMAKLLDSVGHGSLDVRLKKLAAERNELQDELRHVKLELEEERAKSNRSGSNPADLEDIQREANKQLGDYKFKLQKAEQDVSTLQATVARLDGQVARYKSAAETSERSEDELKVERRKLQRELRECQALCEELETSNNHLQKRLDKLKTAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00386350;
- 90% Identity
- iTF_01500356;
- 80% Identity
- -