Llin012821.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- lrrfip2
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000005.1:9115653-9132301[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-103 2.2e-98 330.1 37.8 1 300 40 342 40 342 0.93 2 2 0.0062 1.9e+02 1.9 5.0 120 171 340 391 340 413 0.78
Sequence Information
- Coding Sequence
- ATGAATGTTGGCTGGTTCGTCAATGGCCAATGCCTCAAAAGAAAGGCCCAGCAAAAAGTCCGAAGTAGCATGAGTAACCTAACATTTAAATGTCATAATCGCATAGTAGAGCTGATGGCAGAGGCGAGGCTTGCTGCGAGACGGCAGGCAAGGGCAGAGGCCCGTGAGATCCGTATGAAAGAGATCGAGCGACAGCAGAAGGAAGCTGACGAAAATGCCGATCGAATATACGACATCTACACTTCTACCCCTGACGGCGTTGGTCGGACGAGCAGAGTCAACTCCTCTCTTAACAGCAGCCGCCTGTCAGCTTCAAACAGTTACCAAAGCTCGAGGCGGAGTTCTGAGGATTCCCTCGAGGAAACTGCCTCCCTCAGGGATGTCAGGAGCGAACTCCGTGAGGTGGAAGACAAGTTCAGGAAGGCGATGGTCGGGAACGCTCAGTTGGACAACGAGAAAGCGGCCGCCGTTTACCAAGTTGAGCTGTACAAGGACAGATACGAGGAACTGGAAGAAGAACACAATCAGCTTCAGAGAGAGCAAAAGGAAAAGTGCCGACAGCTGGAGCAGATGAAGAGGGATTATGTTCGTCTGCAGCAGGATCTCGCAGCTGCCCTCGCAGCGTTGGCTGAGCGTGATAGACTAATCGAGGAGCAGGGACTGGTGATAGTGGGAGGCGAAACGTCGTCCAGCGCTACGGAAAGCGATGAAGATGATGACAAAGGTGGAGGCGAGAAGAAAGGAAAAGATAAACATAAAAAAGCCCTCGTGTCATCCGACATGGCCAAACTCCTCGATTCGGTCGGCCACGGTTCTTTAGATGTAAGATTAAAGAAGCTAGCTGCGGAAAGGAATGAACTTCAAGACGAGCTGAGGCACGTGAAACTCGAACTTGAGGAAGAAAGAGCCAAGTCGAACAGGTCCGGGTCAAACCCAGCTGACTTGGAAGATATTCAACGAGAGGCTAACAAGCAACTGGGAGACTACAAATTCAAGCTTCAAAAAGCTGAACAAGACGTTTCTACGCTTCAAGCGACGGTTGCGCGGCTGGATGGACAGGTGGCGAGGTACAAATCGGCGGCTGAAACGTCCGAAAAAAACGAAGATGAACTCAAAGTAGAACGAAGGAAATTACAAAGAGAGTTACGAGAATGTCAAGCGCGGTGTGAGGAATTAGAAACATCAAATAATCACCTGCAAAAGAGGCTGGATAAACTGAAGACAGCGAAATCGGCACTTCTGAAGGACTTGTAG
- Protein Sequence
- MNVGWFVNGQCLKRKAQQKVRSSMSNLTFKCHNRIVELMAEARLAARRQARAEAREIRMKEIERQQKEADENADRIYDIYTSTPDGVGRTSRVNSSLNSSRLSASNSYQSSRRSSEDSLEETASLRDVRSELREVEDKFRKAMVGNAQLDNEKAAAVYQVELYKDRYEELEEEHNQLQREQKEKCRQLEQMKRDYVRLQQDLAAALAALAERDRLIEEQGLVIVGGETSSSATESDEDDDKGGGEKKGKDKHKKALVSSDMAKLLDSVGHGSLDVRLKKLAAERNELQDELRHVKLELEEERAKSNRSGSNPADLEDIQREANKQLGDYKFKLQKAEQDVSTLQATVARLDGQVARYKSAAETSEKNEDELKVERRKLQRELRECQARCEELETSNNHLQKRLDKLKTAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00386350;
- 90% Identity
- iTF_01500356;
- 80% Identity
- -